View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_472 (Length: 224)
Name: NF9839A_low_472
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_472 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 18647799 - 18647691
Alignment:
| Q |
8 |
caataaaatcaacaccgtctctttaattaataacaattaatttccttattctccaggtttccaaaataaaaagtatccaattaccatgaataccacatgc |
107 |
Q |
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| T |
18647799 |
caataaaatcaacaccgtctctttaattaataacaatt----tccttattctccaggttttcaaaataaaaagtatccaattaccatgagtgccacatac |
18647704 |
T |
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| Q |
108 |
tccaatttccatt |
120 |
Q |
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| T |
18647703 |
ttcaatttccatt |
18647691 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 18647624 - 18647588
Alignment:
| Q |
188 |
aataccttccttttcttcaccttcattaaaagtatga |
224 |
Q |
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| T |
18647624 |
aataccttccttttcttcaccttcattaaaagtatga |
18647588 |
T |
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