View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_475 (Length: 223)
Name: NF9839A_low_475
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_475 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 1548046 - 1547866
Alignment:
| Q |
23 |
agaagcagagaattagaataagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtca |
122 |
Q |
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| T |
1548046 |
agaagcagagaattagaataagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtca |
1547947 |
T |
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| Q |
123 |
aacaacttccgaaaagcttgacccataataaccacttgaatactttcaatttcaat--tctagtttgcaatttgtgctgag |
201 |
Q |
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| T |
1547946 |
aacaacttccgaaaagcttgacccataataaccacttgaaagctttcaatttcaattctctagtttgcaatttgtgctgag |
1547866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 1544185 - 1544007
Alignment:
| Q |
23 |
agaagcagagaattagaataagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1544185 |
agaagcagagaattagaataagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccctgatctcggtattgccaaagagggtgtca |
1544086 |
T |
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| Q |
123 |
aacaacttccgaaaagcttgacccataataaccacttgaatactttcaatttcaattctagtttgcaatttgtgctgag |
201 |
Q |
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| T |
1544085 |
aacagcttccgaaaagcttgacccataataaccacttgaaagctttcaatttcaatcctagtttgcagtttgtgctgag |
1544007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 1540191 - 1540148
Alignment:
| Q |
105 |
ttgccaaagagggtgtcaaacaacttccgaaaagcttgacccat |
148 |
Q |
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| T |
1540191 |
ttgccaaagaatgtgtcaaacaacttccgaaaaacttgacccat |
1540148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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