View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_483 (Length: 221)
Name: NF9839A_low_483
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_483 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 42844465 - 42844265
Alignment:
| Q |
7 |
cagagatgaataagaaaccaatatgaaaaactaaaaagaaacctaagacctatnnnnnnnnn-----gagacacgactcagtgcaaccttagaagaccgc |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
42844465 |
cagaaatgaataagaaaccaatatgaaaaactaaaaagaaacctaagacctataaaaaaaaaaaaaagagacacgactcaatgcaaccttagaagaccgc |
42844366 |
T |
|
| Q |
102 |
cgctaacgcctgtaaatcattaaatgcttgaagaagttcataatatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42844365 |
cgctaacgcctgtaaatcattaaatgcttgaagaagttcataatatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttc |
42844266 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
42844265 |
t |
42844265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 7363295 - 7363366
Alignment:
| Q |
70 |
agacacgactcagtgcaaccttagaagaccgccgctaacgcctgtaaatcattaaatgcttgaagaagttca |
141 |
Q |
| |
|
|||||| ||||| || |||||||||| ||| || ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7363295 |
agacacaactcaatgtaaccttagaaaaccaccactaacacctgtaaatcattaaatgtctgaagaagttca |
7363366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 7363222 - 7363256
Alignment:
| Q |
12 |
atgaataagaaaccaatatgaaaaactaaaaagaa |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7363222 |
atgaataagaaaccaatatgaaaaactaaaaagaa |
7363256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University