View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_489 (Length: 220)
Name: NF9839A_low_489
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_489 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 53467047 - 53467235
Alignment:
| Q |
31 |
tggtgttgcaagtatatataaaaagcatccatttgaggggggcatacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaa |
130 |
Q |
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| T |
53467047 |
tggtggtgcaagtatatataaaaagcatcaatttgagggg-gcatacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaa |
53467145 |
T |
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| Q |
131 |
gtgtgaggtagaagttcaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatgccttatgattttgaatg |
220 |
Q |
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| T |
53467146 |
gtgtgaggtagaagtccaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatgccttaagattttgaatg |
53467235 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 45636047 - 45635976
Alignment:
| Q |
74 |
atacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
145 |
Q |
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| T |
45636047 |
atacccaaatgaatggatggatgactcacacttgagagggagattgttgtgtaccaagtgtgagatagaagt |
45635976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 13154560 - 13154520
Alignment:
| Q |
105 |
ttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
145 |
Q |
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| T |
13154560 |
ttgagaggaagattgttgtgtagcaagtatgagttagaagt |
13154520 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 42730284 - 42730342
Alignment:
| Q |
94 |
atgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacat |
152 |
Q |
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| T |
42730284 |
atgactcacacttgaggggaagattgttgtgtagcaagtctgagttagaagttccacat |
42730342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 28483750 - 28483780
Alignment:
| Q |
115 |
gattgttgtgtagcaagtgtgaggtagaagt |
145 |
Q |
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| T |
28483750 |
gattgttgtgtagcaagtgtgaggtagaagt |
28483780 |
T |
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