View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_490 (Length: 220)
Name: NF9839A_low_490
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_490 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 37704509 - 37704454
Alignment:
| Q |
9 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
64 |
Q |
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| T |
37704509 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 37698691 - 37698636
Alignment:
| Q |
9 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
64 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37698691 |
ataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 37437573 - 37437520
Alignment:
| Q |
11 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
64 |
Q |
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||||||||| |||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
37437573 |
aagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 37699030 - 37698974
Alignment:
| Q |
9 |
ataagggaatacgtagactcaat--ttgcaaacaatctaataagtcaacctttttgg |
63 |
Q |
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|||||||||||| |||||||||| ||| |||||||||||||| |||| |||||||| |
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| T |
37699030 |
ataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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