View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_491 (Length: 220)

Name: NF9839A_low_491
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_491
NF9839A_low_491
[»] chr7 (8 HSPs)
chr7 (102-208)||(8784234-8784340)
chr7 (102-200)||(12565067-12565166)
chr7 (105-208)||(13633700-13633804)
chr7 (105-208)||(13740380-13740484)
chr7 (100-200)||(14223669-14223772)
chr7 (102-203)||(4310688-4310788)
chr7 (126-191)||(542030-542097)
chr7 (156-200)||(16327805-16327848)
[»] chr3 (5 HSPs)
chr3 (102-198)||(3247142-3247240)
chr3 (100-200)||(6812923-6813027)
chr3 (125-208)||(15023684-15023767)
chr3 (105-196)||(3272366-3272457)
chr3 (105-141)||(892046-892082)
[»] chr6 (7 HSPs)
chr6 (92-209)||(23520213-23520329)
chr6 (100-200)||(22063560-22063663)
chr6 (105-196)||(22581793-22581884)
chr6 (105-196)||(22584583-22584674)
chr6 (105-196)||(22589414-22589505)
chr6 (127-192)||(25966250-25966315)
chr6 (105-142)||(18427299-18427336)
[»] chr1 (4 HSPs)
chr1 (100-200)||(27044946-27045048)
chr1 (97-200)||(21786506-21786611)
chr1 (112-203)||(22627181-22627272)
chr1 (94-196)||(19878163-19878264)
[»] chr4 (8 HSPs)
chr4 (100-200)||(15349893-15349996)
chr4 (125-200)||(11498661-11498735)
chr4 (88-198)||(11919172-11919282)
chr4 (102-200)||(14687835-14687934)
chr4 (102-200)||(18290101-18290200)
chr4 (125-198)||(45241017-45241090)
chr4 (125-198)||(10628739-10628811)
chr4 (105-142)||(15262618-15262655)
[»] scaffold0222 (1 HSPs)
scaffold0222 (102-200)||(17895-17994)
[»] chr8 (6 HSPs)
chr8 (126-200)||(20000389-20000462)
chr8 (126-208)||(45562625-45562707)
chr8 (125-198)||(20041222-20041294)
chr8 (101-196)||(22288667-22288762)
chr8 (128-198)||(17618732-17618801)
chr8 (91-192)||(22829525-22829624)
[»] scaffold1225 (1 HSPs)
scaffold1225 (93-159)||(281-347)
[»] scaffold0566 (1 HSPs)
scaffold0566 (127-200)||(691-763)
[»] scaffold0012 (2 HSPs)
scaffold0012 (125-198)||(9486-9559)
scaffold0012 (125-198)||(13589-13662)
[»] chr2 (3 HSPs)
chr2 (102-200)||(25361415-25361514)
chr2 (102-208)||(44998295-44998403)
chr2 (103-203)||(23243853-23243953)
[»] scaffold0035 (1 HSPs)
scaffold0035 (104-200)||(52596-52694)
[»] chr5 (3 HSPs)
chr5 (130-200)||(18488129-18488198)
chr5 (96-196)||(22946056-22946155)
chr5 (125-190)||(23602798-23602862)
[»] scaffold0059 (1 HSPs)
scaffold0059 (105-196)||(11239-11329)
[»] scaffold0013 (1 HSPs)
scaffold0013 (105-196)||(234069-234159)
[»] scaffold0150 (1 HSPs)
scaffold0150 (105-196)||(22021-22112)
[»] scaffold1400 (1 HSPs)
scaffold1400 (105-142)||(1010-1047)
[»] scaffold1184 (1 HSPs)
scaffold1184 (103-196)||(652-745)
[»] scaffold0384 (1 HSPs)
scaffold0384 (126-190)||(15230-15293)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 8784340 - 8784234
Alignment:
Q  102 aaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaac 201  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||    
T  8784340 aaccttaacccaaaaaccacaaattcttcaccaatctccatcattaaactcaaacaccttacttaaaccccaaccccatcgctaaaccaacttttcccac 8784241  T
Q  202 accaaac 208  Q
    || ||||    
T  8784240 acaaaac 8784234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 12565067 - 12565166
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||||||| ||||| ||   |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||| |||    
T  12565067 aaccctaacccaataaccaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaaccttacca 12565165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 13633700 - 13633804
Alignment:
Q  105 cctaacccaaaaaccataat-ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaacac 203  Q
    |||||||||||||||| ||  |||||||||||||||||||||| |||||| ||| || |||||||| | ||| |||||||||||||||||||||| ||||    
T  13633700 cctaacccaaaaaccaaaaaattcttcaccaatctccatcattcaactcataaaactcacttaaactcaaacaccatcactaaaccaacctttcccacac 13633799  T
Q  204 caaac 208  Q
     ||||    
T  13633800 aaaac 13633804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 13740380 - 13740484
Alignment:
Q  105 cctaacccaaaaaccataat-ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaacac 203  Q
    |||||||||||||||| ||  |||||||||||||||||||||| |||||| ||| || |||||||| | ||| |||||||||||||||||||||| ||||    
T  13740380 cctaacccaaaaaccaaaaaattcttcaccaatctccatcattcaactcataaaactcacttaaactcaaacaccatcactaaaccaacctttcccacac 13740479  T
Q  204 caaac 208  Q
     ||||    
T  13740480 aaaac 13740484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 14223772 - 14223669
Alignment:
Q  100 ttaaccctaacccaaaaaccataatt----tcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctt 195  Q
    ||||||||||||||||||||| ||      ||||||||||||||||||||||||||||  |||||  |||||||||||| ||||||||||||||||||||    
T  14223772 ttaaccctaacccaaaaaccaaaaaaaaaatcttcaccaatctccatcattaaactcatcaacctcgcttaaaccccaa-cccatcactaaaccaacctt 14223674  T
Q  196 tccaa 200  Q
     ||||    
T  14223673 accaa 14223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 4310688 - 4310788
Alignment:
Q  102 aaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaac 201  Q
    |||| |||||||||||||| || |||||||  |||||||| |||| |||||| |||||| |||| || ||||| || ||||||||||||||| |||| ||    
T  4310688 aaccataacccaaaaaccaaaaattcttcatgaatctccaccattgaactcataaacctcactt-aagcccaaacctatcactaaaccaacccttccgac 4310786  T
Q  202 ac 203  Q
    ||    
T  4310787 ac 4310788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 542097 - 542030
Alignment:
Q  126 tcttcaccaatctccatcattaaactcaaaa---accttacttaaaccccaaccccatcactaaaccaa 191  Q
    ||||||||||||||| ||||||||||||  |   |||| ||||||||||||| ||||||||||||||||    
T  542097 tcttcaccaatctccttcattaaactcatcatcaacctcacttaaaccccaa-cccatcactaaaccaa 542030  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 16327848 - 16327805
Alignment:
Q  156 aaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||    
T  16327848 aacctcacttaaaccctaaccc-atcactaaaccaacctttccaa 16327805  T

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Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 3247240 - 3247142
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  3247240 aaccctaacccaaaaaccaaaaagattcttcaccaatctccatcattaaactcataaacctcacttaaaccccaaccccatcactaaaccaacctttcc 3247142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 6812923 - 6813027
Alignment:
Q  100 ttaaccctaacccaaaaaccataat-----ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacct 194  Q
    ||||||||||||||||||||| ||      |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  6812923 ttaaccctaacccaaaaaccaaaaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaacct 6813021  T
Q  195 ttccaa 200  Q
    ||||||    
T  6813022 ttccaa 6813027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 15023684 - 15023767
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaacaccaaac 208  Q
    ||||||||||| |||||||||| |||||  |||| | ||||||||  |||||||||||||||||||||| |||| |||| ||||    
T  15023684 ttcttcaccaaactccatcattcaactcttaaacttcacttaaactacaaccccatcactaaaccaacccttcccacacaaaac 15023767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 3272366 - 3272457
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    |||||||||||||||| || ||| ||||||||| |||  | | |||||| ||| ||||||||||||  |||||||| ||||||| |||||||    
T  3272366 cctaacccaaaaaccacaaattcatcaccaatcgccacaactcaactcataaaacttacttaaaccttaaccccataactaaactaaccttt 3272457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 892046 - 892082
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctcca 141  Q
    |||||||||||||||| || |||||||||||||||||    
T  892046 cctaacccaaaaaccagaaattcttcaccaatctcca 892082  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 23520329 - 23520213
Alignment:
Q  92 taatcccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaa 191  Q
    ||||||| | |||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||||| ||||||| ||||||| ||||||||||||||    
T  23520329 taatcccttaaaccctaacccaaaaaccataaattcttcaccaatatccatgattaaactcataaacctcacttaaa-cccaacctcatcactaaaccaa 23520231  T
Q  192 cctttccaacaccaaact 209  Q
    ||||||| |||| |||||    
T  23520230 cctttcccacacaaaact 23520213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 22063663 - 22063560
Alignment:
Q  100 ttaaccctaacccaaaaaccataat----ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctt 195  Q
    ||||||||||||||||||||| ||     |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||    
T  22063663 ttaaccctaacccaaaaaccaaaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaacctt 22063565  T
Q  196 tccaa 200  Q
    |||||    
T  22063564 tccaa 22063560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 22581884 - 22581793
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    ||||||||||| |||| || ||| |||||||||||||  | |||||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  22581884 cctaacccaaacaccacaaattcatcaccaatctccacaactaaactcataaaccttacttaaaccttaaccccataactaaaccaaccttt 22581793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 22584674 - 22584583
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    ||||||||||| |||| || ||| |||||||||||||  | |||||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  22584674 cctaacccaaacaccacaaattcatcaccaatctccacaactaaactcataaaccttacttaaaccttaaccccataactaaaccaaccttt 22584583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 22589505 - 22589414
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    ||||||||||| |||| || ||| |||||||||||||  | |||||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  22589505 cctaacccaaacaccacaaattcatcaccaatctccacaactaaactcataaaccttacttaaaccttaaccccataactaaaccaaccttt 22589414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 25966250 - 25966315
Alignment:
Q  127 cttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaac 192  Q
    ||||||||||||||| |||| |||||| |||||| |||||||||| ||||||||||||||||||||    
T  25966250 cttcaccaatctccaccattcaactcataaacctgacttaaacccaaaccccatcactaaaccaac 25966315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 18427299 - 18427336
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccat 142  Q
    |||||||||||||||| || ||||||||||||||||||    
T  18427299 cctaacccaaaaaccagaaattcttcaccaatctccat 18427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 27044946 - 27045048
Alignment:
Q  100 ttaaccctaacccaaaaaccataat---ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    ||||||||||||||||||||| ||    |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||    
T  27044946 ttaaccctaacccaaaaaccaaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaaccttt 27045044  T
Q  197 ccaa 200  Q
    ||||    
T  27045045 ccaa 27045048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 21786611 - 21786506
Alignment:
Q  97 ccattaaccctaacccaaaaaccataat---ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacc 193  Q
    ||||||| |||||||||||||||| ||    ||||||||||||| |||||||||||||||  ||||| |||||| |||||| ||||||||||||||||||    
T  21786611 ccattaaacctaacccaaaaaccaaaaaaaattcttcaccaatccccatcattaaactcatcaacctcacttaagccccaa-cccatcactaaaccaacc 21786513  T
Q  194 tttccaa 200  Q
    |||||||    
T  21786512 tttccaa 21786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 22627272 - 22627181
Alignment:
Q  112 caaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaacac 203  Q
    ||||||||| || ||||||||||||||||| |||| |||||| |||||| |||||||||  ||||||||||||||||||||| |||| ||||    
T  22627272 caaaaaccaaaaattcttcaccaatctccaccattcaactcataaacctcacttaaacctaaaccccatcactaaaccaacccttcccacac 22627181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 19878264 - 19878163
Alignment:
Q  94 atcccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacc 193  Q
    |||||||||||| |||||||||||||| ||  ||||||||||||||||  | |||||||| | ||||||||| ||||  |||||||| ||||||||||||    
T  19878264 atcccattaacc-taacccaaaaaccacaaaatcttcaccaatctccacaactaaactcatagaccttactttaaccttaaccccataactaaaccaacc 19878166  T
Q  194 ttt 196  Q
    |||    
T  19878165 ttt 19878163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 15349996 - 15349893
Alignment:
Q  100 ttaaccctaacccaaaaaccataat----ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctt 195  Q
    ||||||||||||||||||||| ||     |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||    
T  15349996 ttaaccctaacccaaaaaccaaaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaacctt 15349898  T
Q  196 tccaa 200  Q
    |||||    
T  15349897 tccaa 15349893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 11498735 - 11498661
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||| ||||    
T  11498735 ttcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaaccttaccaa 11498661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 11919282 - 11919172
Alignment:
Q  88 tttgtaatcccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaa 187  Q
    ||||||| ||| |||| |||||||||||||||| || |||||||| ||||| ||||| ||||||||||   |||||||||| |||||||||||||||| |    
T  11919282 tttgtaacccctttaaacctaacccaaaaaccacaaattcttcactaatcttcatcactaaactcaaatttcttacttaaaacccaaccccatcactaca 11919183  T
Q  188 ccaacctttcc 198  Q
     | ||||||||    
T  11919182 actacctttcc 11919172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 14687934 - 14687835
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||||||||||||| ||   |||||||| ||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||| |||||||    
T  14687934 aaccctaacccaaaaaccaaaaaaattcttcactaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaagccaatctttcca 14687836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 18290101 - 18290200
Alignment:
Q  102 aaccctaacccaaaaaccata--atttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||||||||||||| |  | ||||||||||||||||||||||||||||   || || ||||||||||||| |||||||||||||||||||| |||    
T  18290101 aaccctaacccaaaaaccaaacaaattcttcaccaatctccatcattaaactcgttaatctcacttaaaccccaa-cccatcactaaaccaaccttacca 18290199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 45241090 - 45241017
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    |||||||||||||||| | ||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  45241090 ttcttcaccaatctccgttattcaactcataaacctcacttaaacccaaaccccatcactaaaccaacccttcc 45241017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 10628739 - 10628811
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    ||||||||||||||||| |||| |||||| |||||| || |||| || || |||||||||||||||||| ||||    
T  10628739 ttcttcaccaatctccaccattcaactcataaacctcac-taaaaccaaaacccatcactaaaccaacccttcc 10628811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 15262655 - 15262618
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccat 142  Q
    |||||||||||||||| || ||||||||||||||||||    
T  15262655 cctaacccaaaaaccagaaattcttcaccaatctccat 15262618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 17895 - 17994
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||| |||    
T  17895 aaccctaacccaaaaaccaaaaaaattcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaaccttacca 17993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 20000389 - 20000462
Alignment:
Q  126 tcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||    
T  20000389 tcttcaccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaacctttccaa 20000462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 45562707 - 45562625
Alignment:
Q  126 tcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaacaccaaac 208  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||| ||| ||||||||||||||||| |||| |||| ||||    
T  45562707 tcttcaccaatctccatcattcaactcataaacctcacttaaacccaaacaccatcactaaaccaacccttcccacacaaaac 45562625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 20041294 - 20041222
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    ||||||||||||||||| |||| |||||| ||||||||| |||| || ||||||||||||||||||||| ||||    
T  20041294 ttcttcaccaatctccaccattcaactcataaaccttac-taaatccaaaccccatcactaaaccaacccttcc 20041222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 22288667 - 22288762
Alignment:
Q  101 taaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    |||||||||| ||||||||| || ||| |||||||||||||  |   |||||||||| ||||||| ||||  |||||||| |||||||||||||||    
T  22288667 taaccctaacacaaaaaccacaaattcatcaccaatctccaatacccaactcaaaaatcttactttaaccttaaccccataactaaaccaaccttt 22288762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 17618732 - 17618801
Alignment:
Q  128 ttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    |||||||||||||| |||| |||||| |||||| ||||||| || |||||||||| |||||||||| ||||    
T  17618732 ttcaccaatctccaccattcaactcataaacctcacttaaa-ccaaaccccatcagtaaaccaacccttcc 17618801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 22829525 - 22829624
Alignment:
Q  91 gtaatcccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaacca 190  Q
    |||||||||||   |||||||||||||||| |  ||| |||||||||||||  |   |||||| ||| ||||||||||||  |||||||| |||||||||    
T  22829525 gtaatcccatttgacctaacccaaaaaccaca--ttcatcaccaatctccacaacccaactcataaaacttacttaaaccttaaccccataactaaacca 22829622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1225 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1225
Description:

Target: scaffold1225; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 281 - 347
Alignment:
Q  93 aatcccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaacc 159  Q
    |||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  281 aatccctttaaccctaagtcaaaaaccataatatcttcaccaatctccatcattaaactcaaaaacc 347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 691 - 763
Alignment:
Q  127 cttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    ||||||||| |||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||    
T  691 cttcaccaacctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaccaacctttccaa 763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 9559 - 9486
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    ||||||||||||||||| |||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  9559 ttcttcaccaatctccaccattgaactcataaacctcacttaaacccaaaccccatcactaaaccaacccttcc 9486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 13662 - 13589
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcc 198  Q
    ||||||||||||||||| |||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  13662 ttcttcaccaatctccaccattgaactcataaacctcacttaaacccaaaccccatcactaaaccaacccttcc 13589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 25361415 - 25361514
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||| ||||||||| ||   |||||||||||||||||| ||||||||||  ||||| ||||||||| ||| ||||||||||||||||||||||||    
T  25361415 aaccctaacgcaaaaaccaaaaaaattcttcaccaatctccattattaaactcatcaacctcacttaaacctcaa-cccatcactaaaccaacctttcca 25361513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 44998295 - 44998403
Alignment:
Q  102 aaccctaacccaaaaaccataat--ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttcca 199  Q
    ||||||||| ||||||||| ||   ||||| |||||||| ||||||| |||||| |||||| |||||||||| ||| ||||||||||||||||| ||||     
T  44998295 aaccctaactcaaaaaccaaaaaaattctttaccaatcttcatcattcaactcataaacctcacttaaacccaaacaccatcactaaaccaacccttccc 44998394  T
Q  200 acaccaaac 208  Q
    |||| ||||    
T  44998395 acacaaaac 44998403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 23243953 - 23243853
Alignment:
Q  103 accctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaaca 202  Q
    |||||||||||||||||   | || || |||||||| |||| | | ||||||||| |||||||||| || || |||| ||||||| | |||||||| |||    
T  23243953 accctaacccaaaaacccccaattttttaccaatcttcatcctaacactcaaaaatcttacttaaaaccgaaacccaccactaaatccacctttcccaca 23243854  T
Q  203 c 203  Q
    |    
T  23243853 c 23243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 52694 - 52596
Alignment:
Q  104 ccctaacccaaaaaccataat---ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    ||||||||||||||||| ||    || ||||||||||||||||||||||||||  ||||| ||||||||||  | |||||||||||||||| ||||||||    
T  52694 ccctaacccaaaaaccaaaaaaaattgttcaccaatctccatcattaaactcatcaacctcacttaaaccctga-cccatcactaaaccaaactttccaa 52596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 18488198 - 18488129
Alignment:
Q  130 caccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctttccaa 200  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||| ||| | ||||||    
T  18488198 caccaatctccatcattaaactcatcaacctcacttaaaccccaa-cccatcactaaaacaatcgttccaa 18488129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 22946056 - 22946155
Alignment:
Q  96 cccattaaccctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaacctt 195  Q
    |||||||||| |||||||||||||| || ||| ||||||||  |||  | |||||||| ||||||||||||||||  || | ||| ||||||||||||||    
T  22946056 cccattaacc-taacccaaaaaccacaaattcatcaccaattcccacaactaaactcataaaccttacttaaaccttaaactcataactaaaccaacctt 22946154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 23602862 - 23602798
Alignment:
Q  125 ttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaacca 190  Q
    ||||||||||||||||| |||| |||||| |||||| || |||| || || |||||||||||||||    
T  23602862 ttcttcaccaatctccaccattcaactcataaacctcac-taaaaccaaaacccatcactaaacca 23602798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 11239 - 11329
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    |||||||||||||||| || ||| ||||||||||||| ||   |||||| ||| |||||| |||||  |||||||| |||||||||||||||    
T  11239 cctaacccaaaaaccacaaattcatcaccaatctcca-caaccaactcataaaacttactaaaaccttaaccccataactaaaccaaccttt 11329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 234159 - 234069
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    |||||||||||||||| || ||| ||||||||||||| ||   |||||| ||| |||||| |||||  |||||||| |||||||||||||||    
T  234159 cctaacccaaaaaccacaaattcatcaccaatctcca-caaccaactcataaaacttactaaaaccttaaccccataactaaaccaaccttt 234069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 22112 - 22021
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    ||||||||||||||| ||| |||||||||||||||||| | | ||| |  ||  || |||||||||   ||| |||||||||||||||||||    
T  22112 cctaacccaaaaaccttaaattcttcaccaatctccataactcaacccctaattctcacttaaaccttcaccacatcactaaaccaaccttt 22021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1400 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1400
Description:

Target: scaffold1400; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 1047 - 1010
Alignment:
Q  105 cctaacccaaaaaccataatttcttcaccaatctccat 142  Q
    |||||||||||||||| || ||||||||||||||||||    
T  1047 cctaacccaaaaaccagaaattcttcaccaatctccat 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 745 - 652
Alignment:
Q  103 accctaacccaaaaaccataatttcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaaccaaccttt 196  Q
    |||||||||||||||||  ||||| |||| |||||| || |   | ||||| ||| |||||||||| ||||| |||||||||||| | ||||||    
T  745 accctaacccaaaaaccccaattttttcatcaatcttcacccaaacactcataaatcttacttaaaacccaaacccatcactaaaaccaccttt 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 15293 - 15230
Alignment:
Q  126 tcttcaccaatctccatcattaaactcaaaaaccttacttaaaccccaaccccatcactaaacca 190  Q
    |||||||||| ||||| |||| |||||| |||||| ||| |||||  ||||||||||||||||||    
T  15293 tcttcaccaacctccaccattcaactcataaacctcactaaaacca-aaccccatcactaaacca 15230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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