View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_497 (Length: 218)
Name: NF9839A_low_497
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_497 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 7861 - 8043
Alignment:
| Q |
36 |
acatcaacatacaatctttatactcttcacatacattctccaacaaagcttgtaactaaggatcaattgcattgcattgaataaaagaaaaagaatacga |
135 |
Q |
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| T |
7861 |
acatcaacatacaatctttatactcttcacatacattctccaacaaagcttgtaactaaggatcaattgcattgcattgaataaaagaaaaagaatacga |
7960 |
T |
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| Q |
136 |
tatacatcgaatatgtttttcctttggcaatgcatgatcaaagtttgttgccttaacaattgcagtatccaatccctgccatt |
218 |
Q |
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| T |
7961 |
tatacatcgaatatgtttttcctttggcaatgcatgatcaaagtttgttgccttaacaattgcagtatccaatccctgccatt |
8043 |
T |
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