View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_5 (Length: 515)
Name: NF9839A_low_5
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 25 - 511
Target Start/End: Original strand, 45141485 - 45141971
Alignment:
| Q |
25 |
caatgatgaatttggccagcaaggtgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
124 |
Q |
| |
|
|||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141485 |
caatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
45141584 |
T |
|
| Q |
125 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141585 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctga |
45141684 |
T |
|
| Q |
225 |
atgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141685 |
atgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccat |
45141784 |
T |
|
| Q |
325 |
aatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141785 |
aatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgt |
45141884 |
T |
|
| Q |
425 |
ggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141885 |
ggtgagcttggagcttacggaattagagtcaattcaatctcaccgtatggtgttgccacgcctcttgcatgtagagcactgaatatg |
45141971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 507
Target Start/End: Original strand, 45152128 - 45152612
Alignment:
| Q |
25 |
caatgatgaatttggccagcaaggtgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
124 |
Q |
| |
|
|||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45152128 |
caatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagtgatgaaaaacaagttgaggaaacc |
45152227 |
T |
|
| Q |
125 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaagg------tggtatgtctagcagcatactagaatttg |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||| || |||||||| |||||||||| || |
|
|
| T |
45152228 |
gtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcatacta----atg |
45152323 |
T |
|
| Q |
219 |
atctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtgg |
318 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||| |||||||| ||||| |
|
|
| T |
45152324 |
atgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtgg |
45152423 |
T |
|
| Q |
319 |
atccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttca |
418 |
Q |
| |
|
|||||||||||| || || ||||| |||| || ||||||||| | | || ||||||||| | |||||||||||||| |||| ||||| || ||| |
|
|
| T |
45152424 |
atccataatttgcacggctagtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctca |
45152523 |
T |
|
| Q |
419 |
acgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaa |
507 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
45152524 |
acgtgcagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaa |
45152612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 505
Target Start/End: Original strand, 38255952 - 38256429
Alignment:
| Q |
25 |
caatgatgaatttggccagcaaggtgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
124 |
Q |
| |
|
|||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||| |
|
|
| T |
38255952 |
caatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagttgaggaaatt |
38256051 |
T |
|
| Q |
125 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctga |
224 |
Q |
| |
|
|| |||||| | ||||| | |||||| ||| ||||||| ||||| ||||| ||||| | | ||| | | ||| ||||||||||||||| | || | |
|
|
| T |
38256052 |
gttgctttcacgttggagagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtcctttatct---agcatactagaatttaacctaa |
38256148 |
T |
|
| Q |
225 |
atgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccat |
324 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | |||||||| |||||||| || ||||| || |
|
|
| T |
38256149 |
atgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtggaaagaaaaatacgaggatcaat |
38256248 |
T |
|
| Q |
325 |
aatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgc |
424 |
Q |
| |
|
|||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| |||| ||||| | ||| | ||| |
|
|
| T |
38256249 |
aatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttataggccttgttaggtcagcatgc |
38256348 |
T |
|
| Q |
425 |
ggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactg |
505 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||| || ||||||||||||||||||||| |
|
|
| T |
38256349 |
ggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagcactg |
38256429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University