View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_502 (Length: 216)
Name: NF9839A_low_502
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_502 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 16898697 - 16898904
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898697 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
16898796 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16898797 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
16898896 |
T |
|
| Q |
208 |
tacttcca |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
16898897 |
tacttcca |
16898904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 18347212 - 18347419
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
18347212 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
18347311 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18347312 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
18347411 |
T |
|
| Q |
208 |
tacttcca |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
18347412 |
tacttcca |
18347419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 34689050 - 34689095
Alignment:
| Q |
32 |
caattttgtcttctccatattactatatctttagggtcaataattt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
34689050 |
caattttgtcttctccatattactatatctagaaggtcaataattt |
34689095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 13237279 - 13237072
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
13237279 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
13237180 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
13237179 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
13237080 |
T |
|
| Q |
208 |
tacttcca |
215 |
Q |
| |
|
|||||||| |
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|
| T |
13237079 |
tacttcca |
13237072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 41641789 - 41641583
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
41641789 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
41641690 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41641689 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
41641590 |
T |
|
| Q |
208 |
tacttcc |
214 |
Q |
| |
|
||||||| |
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|
| T |
41641589 |
tacttcc |
41641583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 33064946 - 33064739
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
33064946 |
ttcgtgttttgtcggtgcttgaaacaattttgccttctccatattactatatctttagggtcaaaaaatttatatgagaaactactgaactcaatcactt |
33064847 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
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|
| T |
33064846 |
attgtcgttactctttagttttctgttgaagtctatccggtagaggtactcaaattggatccgtgatcgattgatagatttcgccgtaatcttaattggt |
33064747 |
T |
|
| Q |
208 |
tacttcca |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
33064746 |
tacttcca |
33064739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 198797 - 198590
Alignment:
| Q |
8 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
198797 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattaccatatctctagagtcaataattttctatgaggaactactgaactcaatcactt |
198698 |
T |
|
| Q |
108 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaccctaattggt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
198697 |
gctgccgttactcaacagttttctgttgaggtctatcccgtagaggtagtcaaattggatcagtgatcgatttctaggtttcgtcgtaaacctaattggt |
198598 |
T |
|
| Q |
208 |
tacttcca |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
198597 |
tacttcca |
198590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 282224 - 282366
Alignment:
| Q |
13 |
gttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgc |
112 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
282224 |
gttctgtgcgtgcttcaaacaattttgtcttctccatattaccatatctctagagtcaataattttctatgaggaactactgaactcaatcacttgctgc |
282323 |
T |
|
| Q |
113 |
cgttactcttcagttttctgttgaagtctatcctgtagaggta |
155 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
282324 |
cgttactcaacagttttctgttgaggtctatcccgtagaggta |
282366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 4162412 - 4162364
Alignment:
| Q |
52 |
tactatatctttagggtcaataattttatatgagaaactactgaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4162412 |
tactatatctttagggtcaataattttatatgagaaacaactgaactca |
4162364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 4174851 - 4174896
Alignment:
| Q |
55 |
tatatctttagggtcaataattttatatgagaaactactgaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4174851 |
tatatctttagggtcaataattttatatgagaaacaactgaactca |
4174896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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