View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_507 (Length: 214)
Name: NF9839A_low_507
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_507 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 15115402 - 15115208
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatctatta |
101 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15115402 |
cacaaaaaccaccatgagccaccaccatcacaccacaaccagcatgaaatctagcaagaaaaccaacatagacacccataaaaatctgccaaatctatta |
15115303 |
T |
|
| Q |
102 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15115302 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaagcagcacctactatgacca |
15115208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 15139918 - 15139724
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatctatta |
101 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15139918 |
cacaaaaaccaccatgagccaccaccatcacaccacaaccagcatgaaatctagcaagaaaaccaacatagacacccataaaaatctgccaaatctatta |
15139819 |
T |
|
| Q |
102 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15139818 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaagcagcacctactatgacca |
15139724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 15123612 - 15123418
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatctatta |
101 |
Q |
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|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||| | |
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| T |
15123612 |
cacaaaaacaaccatgagccaccaccatcacaccacaaccagcatgaaatctagcacgaaaaccaacatacacacccataaaaatcaaccaaatctatca |
15123513 |
T |
|
| Q |
102 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15123512 |
ccacggccaccaccacaactgcaccactggaccctaggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
15123418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 15147800 - 15147606
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatctatta |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||| | |
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| T |
15147800 |
cacaaaaacaaccatgagccaccaccatcacaccacaaccagcatgaaatctagcacgaaaaccaacatacacacccataaaaatcaaccaaatctatca |
15147701 |
T |
|
| Q |
102 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15147700 |
ccacggccaccaccacaactgcaccactggaccctaggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
15147606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 51485194 - 51485388
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatctatta |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
51485194 |
cacaaaaaccaccatgagccaccaccatcacaccacaaccaccatgaaatctaccacgaaaaccaacatacacacccataaaaatcagccaaatctacca |
51485293 |
T |
|
| Q |
102 |
ccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
51485294 |
ccacggccaccaccacaactgcaccagtggacccttggaatcaaccaccgcccccaccacctacaaccagacaaaatcagcaccttctatgacca |
51485388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 13032562 - 13032708
Alignment:
| Q |
50 |
atctaacaagaaaaccaacatagacacccataaaaatcagccaaatctattaccacggccaccaccacaactgcaccagtggaccgttggaatcaaccac |
149 |
Q |
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||||| || ||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13032562 |
atctaccatgaaaaccaacatacacacccacaaaaatcagccaaatctaccaccacgaccaccaccacaactgcaccagtggacccttggaatcaaccac |
13032661 |
T |
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| Q |
150 |
cgtccccaccacatacaaccacacaaaatcagcacctactatgacca |
196 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13032662 |
cgcccccaccacctacaaccacacaaaatcagcacctactatgacca |
13032708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 11444626 - 11444530
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaatcagccaaatcta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||| || |||||| || | | ||||||||||||| || ||||||||| |
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| T |
11444626 |
cacaaaaaccaccatgagccaccaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatcta |
11444530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 11444329 - 11444281
Alignment:
| Q |
145 |
accaccgtccccaccacatacaaccacacaaaatcagcacctactatga |
193 |
Q |
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||||||| | ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
11444329 |
accaccgccgccaccacctacaaccacacaaaatcagcaccaactatga |
11444281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 442 - 359
Alignment:
| Q |
2 |
cacaaaaaccaccatgagccaccaccatcacaccataaccagcatgaaatctaacaagaaaaccaacatagacacccataaaaa |
85 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| || ||||||||||| | ||||||||||||| |
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|
| T |
442 |
cacaaaaaccaccatgagccaccaccatcacgccacaaccatcatgaaatctaccacgaaaaccaacacaaacacccataaaaa |
359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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