View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_510 (Length: 214)
Name: NF9839A_low_510
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_510 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 3084694 - 3084874
Alignment:
| Q |
16 |
acatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactcccctgcaattaagaaatcaacgtattcatacagccggacattg |
115 |
Q |
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| T |
3084694 |
acatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactctcctgcaattaagaaatcaacgtattcatacagccggacattg |
3084793 |
T |
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| Q |
116 |
gtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgtatttt |
196 |
Q |
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| T |
3084794 |
gtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgtatttt |
3084874 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 3093623 - 3093718
Alignment:
| Q |
66 |
ccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatatttt |
164 |
Q |
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| T |
3093623 |
ccgactcccctgcaattaaggaatccatgcattcatgcagtcggac---ggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatatttt |
3093718 |
T |
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