View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_512 (Length: 213)
Name: NF9839A_low_512
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_512 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 9462349 - 9462211
Alignment:
| Q |
75 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaac-----------------aattgttcaagttcattagttgttaatcat |
157 |
Q |
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| T |
9462349 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattatttgttaatcat |
9462250 |
T |
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| Q |
158 |
cttagtttgagatctcagaattattcactctactctctg |
196 |
Q |
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| T |
9462249 |
cttagtttgagatctcagaattattcactctactttctg |
9462211 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 9462391 - 9462363
Alignment:
| Q |
21 |
gtcataacagaaatgatcgcttagcgagc |
49 |
Q |
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| T |
9462391 |
gtcataacagaaatgatcgcttagcgagc |
9462363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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