View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_513 (Length: 212)
Name: NF9839A_low_513
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_513 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 24661985 - 24661808
Alignment:
| Q |
29 |
aagaatatgtaaatcccttcgtttaacttaaatcacaagactttcaaattagttattgaaggattaccctatagtagaagatgttacatgtttccttcta |
128 |
Q |
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| T |
24661985 |
aagaatatgtaaatccctttgtttaacttaaatcacaagactttcaaattagttattgaaggattaccctatagtagaagatgttacatgcttccttcta |
24661886 |
T |
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| Q |
129 |
cattatagctttgtaagtaggttgtgactcgaattcaactacaaaaaataaaatcaaaggttatgatgtccatctcat |
206 |
Q |
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| T |
24661885 |
cattatagctttgtaagtaggttgtgcctcgaattcaactacaaaaaataaaatcaaaggttataatgttcatgtcat |
24661808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 24653811 - 24653692
Alignment:
| Q |
33 |
atatgtaaatcccttcgtttaacttaaatcacaagactttcaaattagttattgaaggattaccctatagtagaagatgttacatgtttccttctacatt |
132 |
Q |
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| T |
24653811 |
atatgtaaatccctttgtataacttaaagcacaacactttcaaattagttattggaggattaccc--tagtggaagacgttacatgttttcttctacatt |
24653714 |
T |
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| Q |
133 |
atagctttgtaagtaggttgtg |
154 |
Q |
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| T |
24653713 |
gtagctttgtaagtagtttgtg |
24653692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 24621640 - 24621532
Alignment:
| Q |
54 |
acttaaatcacaagactttcaaattagttattgaaggattaccctatagtagaagatgtta----catgtttccttctacattatagctttgtaagtagg |
149 |
Q |
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| T |
24621640 |
acttaaatcacaagactttcaaattagttattggaggattaccctgt--tgaaagatgttacatgcatgtttccttcaacattgtagctttttacgtagt |
24621543 |
T |
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| Q |
150 |
ttgtgactcga |
160 |
Q |
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| T |
24621542 |
ttgtgcctcga |
24621532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 24610452 - 24610420
Alignment:
| Q |
159 |
gaattcaactacaaaaaataaaatcaaaggtta |
191 |
Q |
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| T |
24610452 |
gaattcaactacaaaaaataaaattaaaggtta |
24610420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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