View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_515 (Length: 211)
Name: NF9839A_low_515
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_515 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 28135987 - 28136175
Alignment:
| Q |
18 |
acatcacgacaattgtccgatcttacaaatttctagtcctaggcatgagcgggatgtgtttaaatcccaagttggctatatagatggcaatagtgctgct |
117 |
Q |
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| T |
28135987 |
acatcacgacaattgtccgatcttacaaatttctagtcctaggcatgagcgggatgtgttaaaatcccaagttggctatatagatggcaatagtgctgct |
28136086 |
T |
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| Q |
118 |
tatagtgccttggccaatcatcatccttgttcattcttaattttaataacagtgaactactgtttagttgtgtgttgttgatgtccatc |
206 |
Q |
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| T |
28136087 |
tatagtgccttggccaatcatcatccttgttcattcttaattttaataacagtgaactactgtttagttgtgtgttgttgatgtacatc |
28136175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 28136302 - 28136432
Alignment:
| Q |
61 |
catgagcgggatgtgtttaaatcccaagttggctatatagatggcaatagtgctgcttatagtgccttggccaatcatcatccttgttcattcttaattt |
160 |
Q |
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| T |
28136302 |
catgagcgggatgtgtttaaatcccaagtgggctatataaatggcagtagtgctgcttatagtgccttggtcaatcatcatccctgtccattcttaattt |
28136401 |
T |
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| Q |
161 |
taataacagtgaactactgtttagttgtgtg |
191 |
Q |
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| T |
28136402 |
taataacagtgaactactttttagttctgtg |
28136432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 28136181 - 28136231
Alignment:
| Q |
27 |
caattgtccgatcttacaaatttctagtcctaggcatgagcgggatgtgttt |
78 |
Q |
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| T |
28136181 |
caattgaccgatcttacaaatttctagtcct-ggcacgagcgggatgcgttt |
28136231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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