View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_52 (Length: 405)
Name: NF9839A_low_52
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 41872152 - 41872230
Alignment:
| Q |
198 |
ccttacactctatctgctcccgaaagcgcatctgcagaccgctaattcctcatacacagacggggtaagaattgcttatta |
278 |
Q |
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| T |
41872152 |
ccttacactccatctgatcccgaaagcgcatttgtagatcgttaattcctcatacac--acagggtaataattgcttatta |
41872230 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 41872328 - 41872395
Alignment:
| Q |
280 |
agacagacgagattcaatagcgaaagaaata----cctcaactccaagagcagcggataatataactc |
343 |
Q |
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| T |
41872328 |
agactgacgagattcaatagcgaaacaaatatatacctcaactccaagagtagcagataatataactc |
41872395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 50183133 - 50183095
Alignment:
| Q |
289 |
agattcaatagcgaaagaaatacctcaactccaagagca |
327 |
Q |
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| T |
50183133 |
agattcaataacgaaagaaatacctcaactccaagagca |
50183095 |
T |
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