View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_522 (Length: 209)

Name: NF9839A_low_522
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_522
NF9839A_low_522
[»] chr5 (4 HSPs)
chr5 (15-195)||(7391766-7391946)
chr5 (18-157)||(14302215-14302357)
chr5 (18-131)||(26045735-26045849)
chr5 (19-156)||(21398092-21398230)
[»] chr1 (2 HSPs)
chr1 (18-166)||(34775033-34775181)
chr1 (29-130)||(32882564-32882665)
[»] chr2 (1 HSPs)
chr2 (15-151)||(12342995-12343130)
[»] chr7 (1 HSPs)
chr7 (23-166)||(6716515-6716657)
[»] chr8 (2 HSPs)
chr8 (18-108)||(10248338-10248428)
chr8 (15-77)||(43312407-43312469)
[»] chr4 (2 HSPs)
chr4 (18-78)||(49747777-49747837)
chr4 (18-77)||(19311137-19311196)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-77)||(36958-37016)
[»] scaffold1384 (1 HSPs)
scaffold1384 (19-77)||(1428-1486)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 7391766 - 7391946
Alignment:
Q  15 catcaaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccaga 114  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| ||| |    
T  7391766 catcaaaatacatgtcaccacctaaaattgattcctccacggaaaagaccactgtaaaaacgaaatcccgcacagcctgtcgtcactactcacccccaaa 7391865  T
Q  115 gaaacacccctcaaaataatctcccattcctcaacacgaaagcaaagccacaaaaataatctcccattccccaacacgaaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7391866 gaaacacccctcaaaataatctcccattcctcaacacgaaagcagagccacaaaaataatctcccattctccaacacgaaa 7391946  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 14302215 - 14302357
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgcc--agag 115  Q
    ||||||||| ||||||||||||||| ||||||||| || ||| ||||| ||||||||||| || |  |||| || ||||| |||||||| | ||  |||     
T  14302215 caaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaa 14302314  T
Q  116 aaacacccctcaaaa-taatctcccattcctcaacacgaaagc 157  Q
    ||| ||||||||||| ||| |||||| |||| ||||| |||||    
T  14302315 aaatacccctcaaaattaaactcccactcctgaacaccaaagc 14302357  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 26045735 - 26045849
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgc-cagaga 116  Q
    |||||| || ||||||||||||||| || | ||||| | ||| |||||| ||||||||||||| |  |||| ||| |||| |||||||||| |  ||| |    
T  26045735 caaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaa 26045834  T
Q  117 aacacccctcaaaat 131  Q
    |||||||||||||||    
T  26045835 aacacccctcaaaat 26045849  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 21398092 - 21398230
Alignment:
Q  19 aaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccagagaaa 118  Q
    |||||||| ||||||| ||||||| ||  |||||||| |||  |||  ||||||||||| || ||||||| ||| || | | |||||||| |||  ||||    
T  21398092 aaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcccgcaccacccatcatcagtactcacccccaacgaaa 21398191  T
Q  119 cacccctc-aaaataatctcccattcctcaacacgaaag 156  Q
    || ||||| ||||||| |||| | |||||||||| ||||    
T  21398192 caaccctctaaaataaactcctagtcctcaacaccaaag 21398230  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 34775181 - 34775033
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccagagaa 117  Q
    ||||||||| |||| |||||||||| || ||||||||| ||| ||| |||||||||||||||| || |||  |||||||| |||||||||| |||  |||    
T  34775181 caaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcacc-ccaatgaa 34775083  T
Q  118 acacccct-caaaataatctcccattcctcaacacgaaagcaaagccaca 166  Q
    |||||| |  ||||||| |||||| |||||||||| |||||  |||||||    
T  34775082 acacccgtaaaaaataaactcccaatcctcaacaccaaagctgagccaca 34775033  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 32882665 - 32882564
Alignment:
Q  29 tcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccagagaaacacccctcaa 128  Q
    ||||| ||||||||||| ||||||||| ||| || ||||||||| |||| || |  |||| ||| |||| |||||||||| ||  |  ||||||||||||    
T  32882665 tcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccccaacgaacacccctcaa 32882566  T
Q  129 aa 130  Q
    ||    
T  32882565 aa 32882564  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 12343130 - 12342995
Alignment:
Q  15 catcaaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccaga 114  Q
    |||||||||||| ||||||||||||||| || ||||||||| ||| |||| |||||||||||| ||  |  ||| | | |||| |||||||||| ||  |    
T  12343130 catcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatat--ccaaccactcatcgtcactactcaccccccaa 12343033  T
Q  115 gaaacacccctc-aaaataatctcccattcctcaacac 151  Q
    |||||||||||| ||||||| |||||| ||||||||||    
T  12343032 gaaacacccctcaaaaataaactcccagtcctcaacac 12342995  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 6716515 - 6716657
Alignment:
Q  23 tacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcaccgccagagaaacacc 122  Q
    |||||| |||||||||||||  | ||||||||| ||| ||||||||||||||||  ||  | |||| ||| | || |||||||||| |||  ||||||||    
T  6716515 tacatgacaccacctaaaac--actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaacacc 6716612  T
Q  123 cctcaaaa-taatctcccattcctcaacacgaaagcaaagccaca 166  Q
    || ||||| ||| ||||||||||||||||| |||||  |||||||    
T  6716613 ccacaaaattaaactcccattcctcaacaccaaagctgagccaca 6716657  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 10248338 - 10248428
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaaattccgcaccgcccgtcgttactactcacc 108  Q
    ||||||||| |||||||||||||||  | ||||||||| ||| ||||||||||||||||| || || || | ||| |||| ||||||||||    
T  10248338 caaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacc 10248428  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 43312407 - 43312469
Alignment:
Q  15 catcaaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacga 77  Q
    |||||||||||||||||||||||||| | || |||| |||  ||| |||||||||||||||||    
T  43312407 catcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacga 43312469  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 49747837 - 49747777
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacgaa 78  Q
    |||||| |||||||||||||||||| || || |||||| ||| ||||| ||||||||||||    
T  49747837 caaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacgaa 49747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19311137 - 19311196
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacga 77  Q
    ||||||||| |||||||||  |||| |||||||||||| ||| || ||||||||||||||    
T  19311137 caaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacga 19311196  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37016 - 36958
Alignment:
Q  18 caaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacga 77  Q
    ||||||||| ||||||||||||||| || |||||||| ||||  ||||||||||||||||    
T  37016 caaaatacacgtcaccacctaaaacagactccttcac-gaaaccaccactgtaaaaacga 36958  T

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Target: scaffold1384 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1428 - 1486
Alignment:
Q  19 aaaatacatgtcaccacctaaaactgattccttcacggaaaagaccactgtaaaaacga 77  Q
    |||||||| |||||||||||||||||| |||| ||||  ||  ||||||||||||||||    
T  1428 aaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacga 1486  T

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