View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_523 (Length: 209)

Name: NF9839A_low_523
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_523
NF9839A_low_523
[»] chr1 (1 HSPs)
chr1 (18-188)||(34900536-34900706)
[»] chr2 (3 HSPs)
chr2 (66-164)||(26894639-26894737)
chr2 (66-164)||(26900078-26900176)
chr2 (66-164)||(4405789-4405887)
[»] scaffold0012 (1 HSPs)
scaffold0012 (41-146)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (66-164)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (65-116)||(29467354-29467405)
chr7 (60-122)||(30944960-30945022)
chr7 (66-122)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 34900536 - 34900706
Alignment:
Q  18 atcaaagggatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaagggg 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34900536 atcaaagagatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggga 34900635  T
Q  118 aagacagctcttaggagaaaagagctatcgatgaaatggaactagttttcgcctcactggttatgattata 188  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  34900636 aagacagctcttagaagaaaagagctatcaatgaaatggaactagttctcgcctcactcgttatgattata 34900706  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 26894737 - 26894639
Alignment:
Q  66 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 164  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26894737 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26894639  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 26900176 - 26900078
Alignment:
Q  66 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 164  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26900176 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26900078  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 4405789 - 4405887
Alignment:
Q  66 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 164  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||||| ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  4405789 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagggaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 4405887  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 183286 - 183182
Alignment:
Q  41 attgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaaga 140  Q
    ||||| |||||| ||| ||||||||||| || |||||||||||||||||| |||||| || ||| |||||||| || |||    ||||||||||||||||    
T  183286 attgaaaaatattttacgtttttgtttt-gagtcgagagaaaagagttatttgttaggtggagctaccactaaaggaaaggtcactcttaggagaaaaga 183188  T
Q  141 gctatc 146  Q
    ||||||    
T  183187 gctatc 183182  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 9814699 - 9814797
Alignment:
Q  66 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 164  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  9814699 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagagaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 9814797  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 29467405 - 29467354
Alignment:
Q  65 tttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggg 116  Q
    ||||||| |||||||||||||| ||| ||||||||||| | |||||||||||    
T  29467405 tttttgagtcgagagaaaagagatatctgttagatgaatctaccactaaggg 29467354  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 30944960 - 30945022
Alignment:
Q  60 ttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 122  Q
    |||| ||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||| |||||    
T  30944960 tttttttttttagtcgagagaaaagagctatctgttagatggagctaccactaagggaaagac 30945022  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 30943933 - 30943989
Alignment:
Q  66 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 122  Q
    |||||| |||||||||||||| |||  |||||||| ||| ||||||||||| |||||    
T  30943933 ttttgagtcgagagaaaagagctatccgttagatggagctaccactaagggaaagac 30943989  T

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