View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_526 (Length: 208)
Name: NF9839A_low_526
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_526 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41334720 - 41334513
Alignment:
| Q |
1 |
gtggtgggtgacaatgcggcactagtgatgagagaagtgaacctaatatggtgtcggatagttcattcagcgagtgaagtgtaattggttcaccattcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41334720 |
gtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcattcagcgagtgaagtgtaattggttcaccattcaa |
41334621 |
T |
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| Q |
101 |
cttttcataatttgttgttttaattccattttccgcttcatatttagcaattgctgctggaccgtttttgtcgaatttaactatatctttccaccagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41334620 |
cttttcataatttgttgttttaattccattttccgcttcatatttagcaattgctgctggaccgtttttgtcgaatttaactatttctttccaccagcct |
41334521 |
T |
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| Q |
201 |
cgtaaatt |
208 |
Q |
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|||||||| |
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| T |
41334520 |
cgtaaatt |
41334513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 41360415 - 41360378
Alignment:
| Q |
171 |
tcgaatttaactatatctttccaccagcctcgtaaatt |
208 |
Q |
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| T |
41360415 |
tcgaatttaactatatctttccaccagcctcgtaaatt |
41360378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 4154116 - 4154176
Alignment:
| Q |
136 |
cttcatatttagcaattgctgctggaccgtttttgtcgaatttaactatatctttccacca |
196 |
Q |
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| T |
4154116 |
cttcatgttttgcaattgcaggtgcatcgtttttgtcaaatttaactttatctttccacca |
4154176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20901636 - 20901429
Alignment:
| Q |
1 |
gtggtgggtgacaatgcggcactagtgatgagagaagtgaacctaatatggtgtcggatagttcattcagcgagtgaagtgtaattggttcaccattcaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20901636 |
gtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcgggtagttcattcagcgagtgaagtgtaattgtttcaccattcaa |
20901537 |
T |
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| Q |
101 |
cttttcataatttgttgttttaattccattttccgcttcatatttagcaattgctgctggaccgtttttgtcgaatttaactatatctttccaccagcct |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20901536 |
cttttcataatttgttgttgtaattccattttccgcttcatatttagcaattgccgctggaccgtttttgtcgaatttaactatatctttccaccagcct |
20901437 |
T |
|
| Q |
201 |
cgtaaatt |
208 |
Q |
| |
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|||||||| |
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| T |
20901436 |
cgtaaatt |
20901429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20920099 - 20919892
Alignment:
| Q |
1 |
gtggtgggtgacaatgcggcactagtgatgagagaagtgaacctaatatggtgtcggatagttcattcagcgagtgaagtgtaattggttcaccattcaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20920099 |
gtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggttagttcattcagcgagtgaagtgtaattgtttcaccattcaa |
20920000 |
T |
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| Q |
101 |
cttttcataatttgttgttttaattccattttccgcttcatatttagcaattgctgctggaccgtttttgtcgaatttaactatatctttccaccagcct |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20919999 |
cttttcataatttgttgttgtaattccattttccgcttcatatttagcaattgccgctggaccgtttttgtcgaatttaactatttctttccaccagcct |
20919900 |
T |
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| Q |
201 |
cgtaaatt |
208 |
Q |
| |
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|||||||| |
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| T |
20919899 |
cgtaaatt |
20919892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 19492366 - 19492403
Alignment:
| Q |
171 |
tcgaatttaactatatctttccaccagcctcgtaaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19492366 |
tcgaatttaactatatctttccaccagcctcgtaaatt |
19492403 |
T |
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