View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_533 (Length: 206)
Name: NF9839A_low_533
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_533 |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 31962592 - 31962424
Alignment:
| Q |
24 |
aacagagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatatta |
123 |
Q |
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| T |
31962592 |
aacagagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatatta |
31962493 |
T |
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| Q |
124 |
tggattttgattcgcagttttctcctttctttctgatttggtctgcctgctaggttatgaaattgatgt |
192 |
Q |
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| T |
31962492 |
tggattttgattcgcagttttcacctttctttctgatttggtctgcctgctaggttatgaaattgatgt |
31962424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 31898794 - 31898626
Alignment:
| Q |
24 |
aacagagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatatta |
123 |
Q |
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| T |
31898794 |
aacagagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttataata |
31898695 |
T |
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| Q |
124 |
tggattttgattcgcagttttctcctttctttctgatttggtctgcctgctaggttatgaaattgatgt |
192 |
Q |
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| T |
31898694 |
tggattttgattcgcagttttcaccgttctttctgatttggtctgcctgctaggttatgaaattgatgt |
31898626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 6986730 - 6986895
Alignment:
| Q |
27 |
agagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatattatgg |
126 |
Q |
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| T |
6986730 |
agagatgaagaaattcaagaaaattttggtatcgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgg |
6986829 |
T |
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| Q |
127 |
attttgattcgcagttttctcctttctttctgatttggtctgcctgctaggttatgaaattgatgt |
192 |
Q |
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| T |
6986830 |
attttgattcacagttttcgctgttccttctgatgttgtctacctgcctggttgttaaattgatgt |
6986895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 7045428 - 7045540
Alignment:
| Q |
27 |
agagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatattatgg |
126 |
Q |
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| T |
7045428 |
agagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgg |
7045527 |
T |
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| Q |
127 |
attttgattcgca |
139 |
Q |
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|||| ||||||| |
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| T |
7045528 |
tttttcattcgca |
7045540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 14261 - 14373
Alignment:
| Q |
27 |
agagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatattatgg |
126 |
Q |
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| T |
14261 |
agagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgg |
14360 |
T |
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| Q |
127 |
attttgattcgca |
139 |
Q |
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|||| ||||||| |
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| T |
14361 |
tttttcattcgca |
14373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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