View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_534 (Length: 206)

Name: NF9839A_low_534
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_534
NF9839A_low_534
[»] chr3 (4 HSPs)
chr3 (6-197)||(46743101-46743292)
chr3 (74-179)||(11387284-11387388)
chr3 (7-79)||(52984642-52984714)
chr3 (6-63)||(52991648-52991705)
[»] chr1 (12 HSPs)
chr1 (6-197)||(27786955-27787146)
chr1 (6-197)||(25537450-25537637)
chr1 (74-179)||(47896527-47896631)
chr1 (9-179)||(29099279-29099449)
chr1 (11-137)||(14351486-14351612)
chr1 (48-189)||(26842197-26842333)
chr1 (85-180)||(8039051-8039149)
chr1 (50-122)||(10494579-10494651)
chr1 (137-197)||(15495749-15495809)
chr1 (77-153)||(4654034-4654109)
chr1 (7-121)||(2077718-2077832)
chr1 (26-122)||(11814365-11814461)
[»] chr2 (8 HSPs)
chr2 (6-197)||(1533039-1533230)
chr2 (6-197)||(27888513-27888704)
chr2 (7-137)||(14951132-14951262)
chr2 (58-197)||(40900017-40900156)
chr2 (7-137)||(6186566-6186696)
chr2 (8-131)||(9910316-9910439)
chr2 (137-197)||(6705381-6705441)
chr2 (7-140)||(38531651-38531783)
[»] chr7 (8 HSPs)
chr7 (7-197)||(32978958-32979148)
chr7 (50-197)||(21590751-21590898)
chr7 (74-194)||(34293730-34293850)
chr7 (74-179)||(10365595-10365699)
chr7 (74-194)||(36582648-36582768)
chr7 (40-140)||(26711897-26711998)
chr7 (8-122)||(24717746-24717860)
chr7 (26-122)||(43047987-43048083)
[»] chr8 (5 HSPs)
chr8 (6-197)||(10181801-10181992)
chr8 (6-197)||(15050255-15050443)
chr8 (82-179)||(38499049-38499145)
chr8 (7-109)||(39580354-39580456)
chr8 (50-123)||(3763285-3763358)
[»] chr6 (6 HSPs)
chr6 (74-194)||(9566640-9566760)
chr6 (26-163)||(10670267-10670404)
chr6 (74-179)||(11366563-11366666)
chr6 (7-133)||(24350486-24350612)
chr6 (26-140)||(30845140-30845254)
chr6 (8-123)||(10772594-10772709)
[»] chr4 (6 HSPs)
chr4 (1-197)||(45872857-45873052)
chr4 (6-197)||(42677816-42678006)
chr4 (46-133)||(52635422-52635508)
chr4 (135-197)||(12130392-12130454)
chr4 (140-179)||(14440982-14441021)
chr4 (7-65)||(55728388-55728446)
[»] chr5 (8 HSPs)
chr5 (6-160)||(24867339-24867493)
chr5 (11-140)||(12155982-12156111)
chr5 (1-152)||(26331678-26331830)
chr5 (1-152)||(26331337-26331488)
chr5 (15-131)||(11470577-11470694)
chr5 (8-125)||(42269097-42269214)
chr5 (50-125)||(40600176-40600251)
chr5 (138-197)||(40680747-40680806)
[»] scaffold0005 (1 HSPs)
scaffold0005 (74-179)||(269760-269864)
[»] scaffold0974 (1 HSPs)
scaffold0974 (8-137)||(2687-2816)
[»] scaffold0083 (1 HSPs)
scaffold0083 (42-79)||(2921-2958)
[»] scaffold0725 (1 HSPs)
scaffold0725 (142-194)||(938-990)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 46743292 - 46743101
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||    
T  46743292 caaaccaagaagtcatctctaaaaaccaaagtccaaacgcccgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctatccaaaataacc 46743193  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  46743192 atcaaacctaccaaaaactcatgcaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactc 46743101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 11387284 - 11387388
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    |||||||||||||| ||||||||| | || ||||||| |||||||||||| || |||| |||||||||||||| |||||||| |||||||||||||||||    
T  11387284 ccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaacccacgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtattt 11387382  T
Q  174 gaaaac 179  Q
    ||||||    
T  11387383 gaaaac 11387388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 52984714 - 52984642
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaac 79  Q
    |||||||||| ||| ||  |||||| |||| | |||| ||||||||||||||||||||||||||| |||||||    
T  52984714 aaaccaagaagtcatctgcaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaac 52984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 52991705 - 52991648
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaac 63  Q
    ||||||||||| ||| ||| ||||| ||||| | ||||||||||||||||| ||||||    
T  52991705 caaaccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaatagaagaaac 52991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 27787146 - 27786955
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| ||| ||||||||||| ||||||| | |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||    
T  27787146 caaaccaagaagtcatctccaaaaaccaaagtccaaacgtctgcgcaatagcagaaacaaatcttaagccaaaccattaaaaaacctctccaaaataacc 27787047  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  27787046 atcaaacctaccaaaaacccatgtaactgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactc 27786955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 25537450 - 25537637
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||||||| ||  ||||| ||||| | |||||||  || |||||||||||||||||||| | || ||| || ||||||||||||||  || ||    
T  25537450 caaaccaagaaatcatcta-aaaaatcaaagtctaaacgcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctccaa--taacc 25537546  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||  || |||||| |||||||    
T  25537547 atcaaacctaccaaaaactcatgtaaccgcaccttaaacaagccacaccgtctaacat-catgtatttgaaaatcccctcaacaacaaactc 25537637  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 47896527 - 47896631
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  47896527 ccaaaccattaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtattt 47896625  T
Q  174 gaaaac 179  Q
    ||||||    
T  47896626 gaaaac 47896631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 29099279 - 29099449
Alignment:
Q  9 accaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatc 108  Q
    |||||||| ||| ||| ||||||||||| | |||||   ||||||||||| |||||||| ||| |||| | | || |||||||||||||||||| |||||    
T  29099279 accaagaagtcatctccaaaaaccaaagtctaaacgtttgcgcaatagcataaacaaattttgtgccatatcgttgaaaaacctctccaaaataaccatc 29099378  T
Q  109 aaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaac 179  Q
    || | ||||||||   ||||||||| | ||||||||||||||||||||||||||||| || ||||||||||    
T  29099379 aaacttaccaaaagtccatgtaatcacgccttaaacaagccacaccatctaacatccatgcatttgaaaac 29099449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 14351612 - 14351486
Alignment:
Q  11 caagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaa 110  Q
    |||||| ||| ||| |||||| |||| | |||| ||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||| |||||||    
T  14351612 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaa 14351513  T
Q  111 ccctaccaaaaactcatgtaatcgcac 137  Q
     ||||||||||||||  ||||||||||    
T  14351512 acctaccaaaaactcgcgtaatcgcac 14351486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 26842333 - 26842197
Alignment:
Q  48 gcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaag 147  Q
    ||||||||| |||||||||||||| | || ||| || ||||||||||||||| || ||||||| |||||||||||| ||||||  |||| |||||||||     
T  26842333 gcgcaataggagaaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgtacccgcatcttaaacaa- 26842235  T
Q  148 ccacaccatctaacatccgtgtatttgaaaactccatcaaca 189  Q
    ||||||| |||||||    ||||||||||||| ||| |||||    
T  26842234 ccacaccgtctaaca----tgtatttgaaaaccccaacaaca 26842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 8039051 - 8039149
Alignment:
Q  85 aaaaacctctccaaa---atacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaact 180  Q
    |||||||||||||||   ||| ||||||| |||||||||||| ||||||| | |||||||||||  |||||||| ||||||| ||||| | ||||||||    
T  8039051 aaaaacctctccaaataaataaccatcaaacctaccaaaaacccatgtaaccacaccttaaacagaccacaccagctaacatgcgtgtgtatgaaaact 8039149  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 10494579 - 10494651
Alignment:
Q  50 gcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaa 122  Q
    |||||||||||||||||||||| |||||||||||  |||||| ||  |||||| ||||||| |||||||||||    
T  10494579 gcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacctaccaaaaa 10494651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 15495749 - 15495809
Alignment:
Q  137 ccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    |||||||||||||||||| |||||||||| |||||||||||||  |||||||| |||||||    
T  15495749 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacctcatcaacaacaaactc 15495809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 4654109 - 4654034
Alignment:
Q  77 aaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacac 153  Q
    |||| |||||||||||||||||| ||  ||||||  ||||||||||| ||||||| ||||| |||||||| ||||||    
T  4654109 aaccgttaaaaaacctctccaaa-taatcatcaaatctaccaaaaacccatgtaaccgcactttaaacaaaccacac 4654034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 2077832 - 2077718
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    ||||||| || ||| ||| ||||||||||| | ||||| | | ||||||||| |||||| ||||| || ||||| ||  ||||||  |||||||||  ||    
T  2077832 aaaccaaaaagtcatctccaaaaaccaaagtctaaacgtctgagcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatca 2077733  T
Q  107 tcaaccctaccaaaa 121  Q
    |||| ||||||||||    
T  2077732 tcaaacctaccaaaa 2077718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 11814365 - 11814461
Alignment:
Q  26 aaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaa 122  Q
    ||||||| ||| | ||||||  ||||||||||||||| |||||||| ||| |||  ||  |||||| ||||||| || ||||||| |||| ||||||    
T  11814365 aaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgttgcaaaacccctccaaagtaaccatcaaacctagcaaaaa 11814461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 1533039 - 1533230
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| ||| ||||||||||| |||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  1533039 caaaccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctctccaaaataacc 1533138  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| | ||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||| |||||||    
T  1533139 atcaaacttaccataaacccatgtaatcgcaccttaaacaagtcataccatctaatatccgtgtatttgaaaaccccatcaacaacaaactc 1533230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 27888513 - 27888704
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| ||| ||||||||||| | ||||| | ||||||||| |||||||||||||| | |||||| ||||||||||||||||||||| ||    
T  27888513 caaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataacc 27888612  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||| | |||||||||||||||||||| ||||  ||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  27888613 atcgaacctaccaaaaactcatgtaaccgcagtttaaacaagccacgccagctaacatccgtgtgtttgaaaaccccatcaacaacaaactc 27888704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 14951262 - 14951132
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    |||||||||||||| ||| ||| || |||| | |||| ||||||||||||||||||||||||||| |||||||| ||  |||||| |||||||||| |||    
T  14951262 aaaccaagaaatcatctccaaacactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataacca 14951163  T
Q  107 tcaaccctaccaaaaactcatgtaatcgcac 137  Q
    |||| |||||||||||||| |||||||||||    
T  14951162 tcaaacctaccaaaaactcgtgtaatcgcac 14951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 40900017 - 40900156
Alignment:
Q  58 agaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatc 157  Q
    |||||||||||||| |||||||| | ||||||||||||||||||| |||| || |||||||||||  ||||||| || |||||||||||||||   | ||    
T  40900017 agaaacaaatcttgtgccaaaccgtaaaaaaacctctccaaaatatccatgaaacctaccaaaaatccatgtaaccgaaccttaaacaagccatgacgtc 40900116  T
Q  158 taacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    |||||||| |||||||||||||  ||||| || |||||||    
T  40900117 taacatccatgtatttgaaaacctcatcatcaacaaactc 40900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 6186696 - 6186566
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    |||||||||| ||| ||| |||||| |||| | |||| |||||||||||||| |||||||||||| | |||||| ||  |||||| || |||||||   |    
T  6186696 aaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcaaaaacaaatcttgtgtcaaaccgttgcaaaaccccttcaaaataatta 6186597  T
Q  107 tcaaccctaccaaaaactcatgtaatcgcac 137  Q
    |||| | |||||||||||| |||||||||||    
T  6186596 tcaaacttaccaaaaactcgtgtaatcgcac 6186566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 9910316 - 9910439
Alignment:
Q  8 aaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccat 107  Q
    |||||| || ||| ||| ||||||||||| | ||||||| | |||||||||||||||| ||||| | |||||| ||  ||||||  || |||||| | ||    
T  9910316 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactat 9910415  T
Q  108 caaccctaccaaaaactcatgtaa 131  Q
    ||| |||||||||||||| |||||    
T  9910416 caatcctaccaaaaactcgtgtaa 9910439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 6705381 - 6705441
Alignment:
Q  137 ccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    |||||||||||||||||| |||||||||| |||||||||||||   ||||||| |||||||    
T  6705381 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacattatcaacaacaaactc 6705441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 38531783 - 38531651
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    ||||||| || ||| ||| ||||||||| | | |||| || ||| | |||||||||||||||||| || ||||  ||  |||||| |||||||| | |||    
T  38531783 aaaccaaaaagtcatctccaaaaaccaacgtctaaacacctgcgtagtagcagaaacaaatcttgtgctaaactgttgcaaaacc-ctccaaaagaacca 38531685  T
Q  107 tcaaccctaccaaaaactcatgtaatcgcacctt 140  Q
    |||| |||||||||||| | ||||| ||||||||    
T  38531684 tcaaacctaccaaaaacccgtgtaaccgcacctt 38531651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 32978958 - 32979148
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    |||||||||| ||| ||| ||||||||||| ||||||||| |||||||  || |||||||||||| |||||||  ||||||||||||||||||||| |||    
T  32978958 aaaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatgacataaacaaatcttgtgccaaactgttaaaaaacctctccaaaataacca 32979057  T
Q  107 tcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    |||| || ||||||||| ||||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||    
T  32979058 tcaaacccaccaaaaacccatgtaaccgcaccttaaacaagccacaccatctaatatccgcctatttgaaaactccatcaacaacaaactc 32979148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 21590898 - 21590751
Alignment:
Q  50 gcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagcc 149  Q
    |||||||||||||||||||||| |||||||| |  ||||| |||||||||||| ||| ||| |||||||||||  ||| ||| ||||||||||||||| |    
T  21590898 gcaatagcagaaacaaatcttgtgccaaaccgtagaaaaatctctccaaaataaccaacaaacctaccaaaaatccatctaaccgcaccttaaacaagtc 21590799  T
Q  150 acaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    || || | |||||||| |||||||||||||||||||| || |||||||    
T  21590798 acgccgtttaacatccatgtatttgaaaactccatcatcaacaaactc 21590751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 34293850 - 34293730
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| ||||||||| ||||||||||| ||||||| |||||||||||  ||||||| |||||||||||||| ||||| || ||||||||| |||||||    
T  34293850 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaatccatgtaaccgcaccttaaacaaaccacatcagctaacatccatgtattt 34293751  T
Q  174 gaaaactccatcaacaccaaa 194  Q
    ||||||  |||||||| ||||    
T  34293750 gaaaacctcatcaacaacaaa 34293730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 10365595 - 10365699
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||||||||||  |||||||| ||||||||||||| |||    
T  10365595 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacagaccacaccagctaacatccgtgtgttt 10365693  T
Q  174 gaaaac 179  Q
    ||||||    
T  10365694 gaaaac 10365699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 36582648 - 36582768
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| ||||||||| | ||||||||| ||||||| |||||||||||| ||||||| ||||| |||||||| ||||||||  ||| ||||||||||||    
T  36582648 ccaaaccgttaaaaaacatttccaaaataaccatcaaacctaccaaaaacccatgtaaccgcactttaaacaaaccacaccagttaagatccgtgtattt 36582747  T
Q  174 gaaaactccatcaacaccaaa 194  Q
    ||||||  |||||||| ||||    
T  36582748 gaaaacctcatcaacaacaaa 36582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 26711897 - 26711998
Alignment:
Q  40 aaacgcccgcgcaatagcagaaacaaatctt-gcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcacc 138  Q
    ||||| ||| |||||||| |||||||||||| | |||||||| || ||||| | ||| |||||| ||||||| |||||||||||| ||||||| ||||||    
T  26711897 aaacggccgtgcaatagcggaaacaaatcttagtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaacccatgtaaccgcacc 26711996  T
Q  139 tt 140  Q
    ||    
T  26711997 tt 26711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 24717746 - 24717860
Alignment:
Q  8 aaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccat 107  Q
    |||||| || ||| ||| ||||||||||| | ||||||| | ||||||| |||||||| ||||| |||||||  ||  ||||||  ||||||||| ||||    
T  24717746 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagtagaaacaagtcttgtgccaaacagttgcaaaacccatccaaaataaccat 24717845  T
Q  108 caaccctaccaaaaa 122  Q
    ||| |||||||||||    
T  24717846 caatcctaccaaaaa 24717860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 43048083 - 43047987
Alignment:
Q  26 aaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaa 122  Q
    ||||||||||| | ||| || || ||||||||| |||||||||||| |  ||||| ||  |||| |  ||||||||| ||||||| |||||||||||    
T  43048083 aaaaaccaaagtctaaatgcacgagcaatagcataaacaaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacctaccaaaaa 43047987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 10181801 - 10181992
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| ||| |||||  |||| ||||||| | | | ||||||| ||||||||| || |||||||| ||||||||||||||||||||| ||    
T  10181801 caaaccaagaagtcatctccaaaaattaaagaccaaacgactgggaaatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagcc 10181900  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| |||||||||||  ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  10181901 atcaaacctaccaaaaatccatgtaaccgcaccttaaacaagtcacaccatataacatccgtgtatttgaaaaccccatcaacaacaaactc 10181992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 15050443 - 15050255
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||||||| ||  ||||| ||||| | |||||||  ||||||||||||||||||||||| | || ||| || ||||||||||||||  || ||    
T  15050443 caaaccaagaaatcatctaaaaaaatcaaagtctaaacgcctacgcaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctccaa--taacc 15050346  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||| | ||||||||||||  || |||||| |||||||    
T  15050345 atcaaacctaccaaaaactcatgtaaccgcaccttaaacaagcaacaccgtctaacat-catgtatttgaaaatcccctcaacaacaaactc 15050255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 38499049 - 38499145
Alignment:
Q  82 ttaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaac 179  Q
    |||||||||||||| ||| || |||| || | |||||||||| |||||||  ||||||||||||| ||||||||  ||||||||||||||||||||||    
T  38499049 ttaaaaaacctctctaaa-taaccattaaacataccaaaaacccatgtaactgcaccttaaacaaaccacaccagttaacatccgtgtatttgaaaac 38499145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 39580456 - 39580354
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    |||||||||| ||| ||| ||||||||||| | ||||| | || |||||||| |||||||||||| | |||||| || ||||| || ||||||||| |||    
T  39580456 aaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtcaaaccgttgaaaaatctatccaaaataacca 39580357  T
Q  107 tca 109  Q
    |||    
T  39580356 tca 39580354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 3763358 - 3763285
Alignment:
Q  50 gcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaac 123  Q
    |||||||||||||||| ||||| |||||||||||  |||||   |||||||||  |||||| ||||||||||||    
T  3763358 gcaatagcagaaacaagtcttgtgccaaaccattgcaaaactcatccaaaataatcatcaatcctaccaaaaac 3763285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 9566640 - 9566760
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||| | |||||| ||||||||| |||||||    
T  9566640 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaactacaccagctaacatccatgtattt 9566739  T
Q  174 gaaaactccatcaacaccaaa 194  Q
    ||||||  |||||||| ||||    
T  9566740 gaaaacctcatcaacaacaaa 9566760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 10670404 - 10670267
Alignment:
Q  26 aaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactc 125  Q
    |||| |||||| | ||| ||| |||||||||||||||||||||||| | |||||| || |||||||||||||||||| | |||||  |||| |||||  |    
T  10670404 aaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaaccgttgaaaaacctctccaaaataactatcaaatctactaaaaatcc 10670305  T
Q  126 atgtaatcgcaccttaaacaagccacaccatctaacat 163  Q
    |||||| ||||||||||||||| |||||| ||||||||    
T  10670304 atgtaaccgcaccttaaacaagtcacaccgtctaacat 10670267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 11366563 - 11366666
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||    
T  11366563 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaactcatgtaaccgcacattaaa-aaaccacaccagctaacatccgtgtattt 11366660  T
Q  174 gaaaac 179  Q
    ||||||    
T  11366661 gaaaac 11366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 24350612 - 24350486
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccca 106  Q
    |||||||||| ||| ||| |||||| |||| | |||| ||||||||||||||||||||||| ||| || ||||| ||  |||||| |||||||||| |||    
T  24350612 aaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaacaaattttgtgctaaaccgttgcaaaacccctccaaaataacca 24350513  T
Q  107 tcaaccctaccaaaaactcatgtaatc 133  Q
    |||| | |||||||||||| |||||||    
T  24350512 tcaaacttaccaaaaactcgtgtaatc 24350486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 30845140 - 30845254
Alignment:
Q  26 aaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactc 125  Q
    ||||||||||| | |||| ||| ||||||||||||||||||||||| | |||||| ||  |||||| |||||||||| ||||||| |||||||||||  |    
T  30845140 aaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaatcc 30845239  T
Q  126 atgtaatcgcacctt 140  Q
    | |||| ||||||||    
T  30845240 aggtaaccgcacctt 30845254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 10772594 - 10772709
Alignment:
Q  8 aaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccat 107  Q
    |||||| || ||| ||| ||||| ||||| | ||||||  | ||||| |||||||||| ||||| |||||||| ||  ||||||  ||||||||| ||||    
T  10772594 aaccaaaaagtcatctccaaaaatcaaagtctaaacgcttgagcaatggcagaaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccat 10772693  T
Q  108 caaccctaccaaaaac 123  Q
    ||| ||||||||||||    
T  10772694 caaacctaccaaaaac 10772709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 45872857 - 45873052
Alignment:
Q  1 gacagcaaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaa 100  Q
    |||| |||||| | || ||| ||| ||||||||||| | ||||||  ||||||||||||||||||||||||  | ||||| ||  ||||| |||||||||    
T  45872857 gacaccaaacccataagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcagaaacaaatcttgtacgaaaccgttgcaaaacgtctccaaaa 45872956  T
Q  101 tacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    || ||| ||| |||||||||||| || |||| ||||||||||||||| || ||| |||||||||| ||||| ||||||| || |||||| |||||||    
T  45872957 taaccaccaaacctaccaaaaacccacgtaaccgcaccttaaacaagtcataccgtctaacatccatgtatctgaaaac-ccctcaacaacaaactc 45873052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 42678006 - 42677816
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||||||||| ||| |||| |||||||||| | ||||||| || ||||| || ||| ||||||||  ||||||  || |||||||||| ||||||| ||    
T  42678006 caaaccaagaagtcatctctcaaaaccaaagtctaaacgcctgcacaataacataaaaaaatcttgtaccaaactgttgaaaaacctcttcaaaataacc 42677907  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    || || ||||||| |||||||||||| ||||||||||||||| ||||   |||||||||| |||| ||||||||  |||||||| |||||||    
T  42677906 atgaaacctaccacaaactcatgtaaccgcaccttaaacaagtcacagtgtctaacatccatgta-ttgaaaacctcatcaacaacaaactc 42677816  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 52635422 - 52635508
Alignment:
Q  46 ccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatc 133  Q
    |||| ||||||||||||||||||||| |||||| | ||  |||| | |||||||||| ||||||| |||||||||||||| |||||||    
T  52635422 ccgctcaatagcagaaacaaatcttgtgccaaatcgttgcaaaatc-ctccaaaataaccatcaaacctaccaaaaactcgtgtaatc 52635508  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 12130392 - 12130454
Alignment:
Q  135 caccttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    |||||||||||||||||  | |||||||||| |||||||||||||  |||||||| |||||||    
T  12130392 caccttaaacaagccacgtcgtctaacatccatgtatttgaaaacctcatcaacaacaaactc 12130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 14440982 - 14441021
Alignment:
Q  140 taaacaagccacaccatctaacatccgtgtatttgaaaac 179  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  14440982 taaacaagccacaccgtctaacatccatgtatttgaaaac 14441021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 55728388 - 55728446
Alignment:
Q  7 aaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaa 65  Q
    |||||||||| ||| ||| |||||| |||| | |||| |||||||||||||||||||||    
T  55728388 aaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaa 55728446  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 24867493 - 24867339
Alignment:
Q  6 caaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaataccc 105  Q
    ||||| ||||| ||| ||| ||||||||||| | ||||||  ||||||||||| |||||||||||| ||||| || || |||| ||||||||||||| ||    
T  24867493 caaacaaagaagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgccaatccgttgaaaatcctctccaaaataacc 24867394  T
Q  106 atcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaa 160  Q
    ||||| | ||  |||||| ||||||| |||||||||||||||||||||| |||||    
T  24867393 atcaaacatattaaaaacccatgtaaccgcaccttaaacaagccacaccgtctaa 24867339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 12155982 - 12156111
Alignment:
Q  11 caagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaa 110  Q
    |||||| ||| ||| |||||| |||| | |||| ||||||||||||||||||||||||||| | |||||||||  |||||| |||||||||| |||||||    
T  12155982 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaa 12156081  T
Q  111 ccctaccaaaaactcatgtaatcgcacctt 140  Q
     ||||||||||||||  |||||||||||||    
T  12156082 acctaccaaaaactcgcgtaatcgcacctt 12156111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26331830 - 26331678
Alignment:
Q  1 gacagcaaaccaagaaa-tcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaa 99  Q
    |||| |||||||| ||| ||| ||| ||||||||||| | ||||| | | ||||||||| ||||||||||||  | ||| | || |||||| |||| |||    
T  26331830 gacaccaaaccaataaagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaa 26331731  T
Q  100 atacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccaca 152  Q
    |||  |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26331730 ataatcatcaaacctaccaaaaactcatgtaaccgcaccttaaacaagccaca 26331678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26331488 - 26331337
Alignment:
Q  1 gacagcaaaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaa 100  Q
    |||| |||||||| || ||| ||| ||||||||||| | ||||| | | ||||||||| ||||||||||||  | ||| | || |||||| |||| ||||    
T  26331488 gacaccaaaccaataagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaa 26331389  T
Q  101 tacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccaca 152  Q
    ||  |||||| |||||||||||  ||||||| | ||||||||||||||||||    
T  26331388 taatcatcaaacctaccaaaaatccatgtaacctcaccttaaacaagccaca 26331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 11470577 - 11470694
Alignment:
Q  15 aaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagca-gaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccc 113  Q
    |||||| ||| ||||||||||  | |||| ||||| ||||| || ||||||||||||| |||||||| ||  |||||| || ||||||| | ||||| ||    
T  11470577 aaatcatctcaaaaaaccaaaatctaaactcccgcacaatatcaagaaacaaatcttgtgccaaaccgttgcaaaaccccttcaaaatagctatcaaacc 11470676  T
Q  114 taccaaaaactcatgtaa 131  Q
    |||||||||||| |||||    
T  11470677 taccaaaaactcgtgtaa 11470694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 42269214 - 42269097
Alignment:
Q  8 aaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccat 107  Q
    |||||| || ||| ||| ||||||||||  | ||||||| | ||||||| |||||||| ||||| |||||||  ||  ||||||  ||||||||| ||||    
T  42269214 aaccaaaaagtcatctccaaaaaccaaattctaaacgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccat 42269115  T
Q  108 caaccctaccaaaaactc 125  Q
    ||| ||||||||||||||    
T  42269114 caatcctaccaaaaactc 42269097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 40600251 - 40600176
Alignment:
Q  50 gcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactc 125  Q
    ||||||||| |||||| ||||| |||||||| ||  ||||||  ||||||||| ||||||| ||||||||||||||    
T  40600251 gcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaacccgtccaaaataaccatcaaacctaccaaaaactc 40600176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 40680747 - 40680806
Alignment:
Q  138 cttaaacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaactc 197  Q
    ||||||||||||||||| |||||||| | |||||||||||||   ||||||| |||||||    
T  40680747 cttaaacaagccacaccgtctaacattcatgtatttgaaaaccttatcaacaacaaactc 40680806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 269760 - 269864
Alignment:
Q  74 ccaaaccattaaaaaacctctccaaaatacccatcaaccctaccaaaaactcatgtaatcgcaccttaaacaagccacaccatctaacatccgtgtattt 173  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||||||||||| |||||| | |||||||||||||||||    
T  269760 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacactagctaacatccgtgtattt 269858  T
Q  174 gaaaac 179  Q
    ||||||    
T  269859 gaaaac 269864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 2816 - 2687
Alignment:
Q  8 aaccaagaaatcaactctaaaaaccaaaggccaaacgcccgcgcaatagcagaaacaaatcttgcgccaaaccattaaaaaacctctccaaaatacccat 107  Q
    |||||| || ||| ||| |||| |||||| | ||||||| | |||||||||||||||| ||||| |||||||| ||  ||| ||  || ||||||  |||    
T  2816 aaccaaaaattcatctccaaaacccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcat 2717  T
Q  108 caaccctaccaaaaactcatgtaatcgcac 137  Q
    ||| |||||||||||||||||||| |||||    
T  2716 caatcctaccaaaaactcatgtaaccgcac 2687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 2921 - 2958
Alignment:
Q  42 acgcccgcgcaatagcagaaacaaatcttgcgccaaac 79  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  2921 acgcccgtgcaatagcagaaacaaatcttgtgccaaac 2958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 938 - 990
Alignment:
Q  142 aacaagccacaccatctaacatccgtgtatttgaaaactccatcaacaccaaa 194  Q
    ||||||| || ||| |||||||||||||||||||||||  |||||||| ||||    
T  938 aacaagcgacgccagctaacatccgtgtatttgaaaacctcatcaacaacaaa 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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