View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_54 (Length: 401)

Name: NF9839A_low_54
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_54
NF9839A_low_54
[»] chr7 (4 HSPs)
chr7 (9-401)||(31409780-31410172)
chr7 (20-121)||(40292838-40292938)
chr7 (53-122)||(9107333-9107401)
chr7 (21-120)||(47456831-47456928)
[»] chr3 (3 HSPs)
chr3 (9-158)||(27399099-27399246)
chr3 (20-120)||(25594339-25594437)
chr3 (9-89)||(46358186-46358266)
[»] chr1 (3 HSPs)
chr1 (13-158)||(40934003-40934147)
chr1 (68-105)||(33383671-33383708)
chr1 (52-121)||(49820307-49820375)
[»] chr5 (2 HSPs)
chr5 (49-119)||(31742355-31742423)
chr5 (52-121)||(17853893-17853961)
[»] chr4 (1 HSPs)
chr4 (52-120)||(12296350-12296417)
[»] chr2 (4 HSPs)
chr2 (69-154)||(16952223-16952308)
chr2 (69-154)||(17022888-17022973)
chr2 (69-154)||(17060194-17060279)
chr2 (52-118)||(20572265-20572329)
[»] chr6 (1 HSPs)
chr6 (21-97)||(13098380-13098455)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 31409780 - 31410172
Alignment:
Q  9 acatcatcacataaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccata 108  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||    
T  31409780 acatcatcacataaaacagactccttcaaaaaacgaccattgaaaaaataatatccataaactacccattgccaccactcaccccaaaagaacacccgta 31409879  T
Q  109 taaatgaaacacccggtcatccacaccaaaattgagtcacatccgatctatcattcagcttccagatcacatacacagtctctctatccctctatcacct 208  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31409880 taaatgaaacacccgatcatccacaccaaaattgaaccacatccgatctatcattcagcttccagatcacatacccagtctctctatccctctatcacct 31409979  T
Q  209 acccagatcacatgaatgcatcactcctttcttgcctctatctatgttaaggcataatataatatttgggtgtgtaggaaaaattttcacttgtaaaatc 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31409980 acccagatcacatgaatgcatcactcctttcttgcttctatctatgctaaggcataatataatatttgggtgtgtaggaaaaattttcacttgtaaaatc 31410079  T
Q  309 tagtttttctgccgcatcaaagtttgttggtacttggtccataagatcataaagccaatatttcaccaccatataaaacaaaaatatgtttga 401  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31410080 tagtttttctgccgcatcaaagtttgttggtacttggtcgataagatcataaagccaatatttcaccaccatataaaacaaaaatatgtttga 31410172  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 40292838 - 40292938
Alignment:
Q  20 taaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaaca 119  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||| |||||| ||||||| | |||||||| |||||||||||| ||||| | |||||    
T  40292838 taaaacagacttcatcacaaaacaaccattgaaaaaacgatatccat-aaccactcatcgcctctactcaccctaaaagaacacccttataattcaaaca 40292936  T
Q  120 cc 121  Q
    ||    
T  40292937 cc 40292938  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 9107401 - 9107333
Alignment:
Q  53 aaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaacaccc 122  Q
    ||||| |||||||||| |||||||||||||| ||||| ||||||| ||| ||| | ||||||||||||||    
T  9107401 aaaacgatatccataa-ccacccatcgccactactcatcccaaaataactcccctctaaatgaaacaccc 9107333  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 47456831 - 47456928
Alignment:
Q  21 aaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaacac 120  Q
    |||||||||  |||||| |||| || | ||||||||||| |||||| ||||||| || ||||||||||| ||||||| ||| ||| | ||||||||||||    
T  47456831 aaaacagaccccttcacgaaaccaccactgaaaaaacaaaatccat-aaccaccaattgccaccactcaacccaaaataac-cccctctaaatgaaacac 47456928  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 27399246 - 27399099
Alignment:
Q  9 acatcatcacataaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccata 108  Q
    |||||||||| |||||||| || ||||||  |||||| | ||||||  | ||||| ||||||||||||| ||||| ||||| ||||||||||||||| |     
T  27399246 acatcatcacctaaaacaggctccttcacgcaacgaccactgaaaa--cgatatctataaaccacccattgccactactcagcccaaaagaacacccgtc 27399149  T
Q  109 taaatgaaacacccggtcatccacaccaaaattgagtcacatccgatcta 158  Q
    |||||||||||||  ||| ||| ||| |||| |||| |||||||||||||    
T  27399148 taaatgaaacaccaagtcctcctcactaaaactgagccacatccgatcta 27399099  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 25594339 - 25594437
Alignment:
Q  20 taaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaaca 119  Q
    ||||||| ||| |||||||||||||| | ||||||||| ||||||  ||||||||||||||||| ||||| ||||| | ||||| | | |||||| ||||    
T  25594339 taaaacatactccttcacaaaacgaccactgaaaaaacgatatcc--aaaccacccatcgccactactcatcccaagataacactcctctaaatggaaca 25594436  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 46358186 - 46358266
Alignment:
Q  9 acatcatcacataaaacagacttcttcac-aaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactca 89  Q
    |||||||||| ||||||||||| |||||| |||||||||  ||||||||| | |||||| |||||| |||| |||| |||||    
T  46358186 acatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatccat-aaccacgcatcaccactactca 46358266  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 40934147 - 40934003
Alignment:
Q  13 catcacataaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaa 112  Q
    |||||| ||||| ||||| |||||| ||| ||  ||||||||| | ||||||||||||||| |||| |||| ||| ||| ||||||||||||| | ||||    
T  40934147 catcacctaaaagagactccttcacgaaatgatcattgaaaaa-cgatatccataaaccacacatcaccactacttacctcaaaagaacacccgtctaaa 40934049  T
Q  113 tgaaacacccggtcatccacaccaaaattgagtcacatccgatcta 158  Q
    ||||||| |  ||| ||| ||||||| ||||| || || |||||||    
T  40934048 tgaaacatcaagtcctcctcaccaaagttgagccatattcgatcta 40934003  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 33383671 - 33383708
Alignment:
Q  68 aaccacccatcgccaccactcaccccaaaagaacaccc 105  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  33383671 aaccacccatcgccactactcaccccaaaaaaacaccc 33383708  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 49820375 - 49820307
Alignment:
Q  52 aaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaacacc 121  Q
    |||||| |||||||||| |||||| |||||||||| || ||||||| | ||||| | |||||||||||||    
T  49820375 aaaaacgatatccataa-ccacccgtcgccaccacacatcccaaaatatcacccctctaaatgaaacacc 49820307  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 31742423 - 31742355
Alignment:
Q  49 tgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaaca 119  Q
    ||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||||| | |||| ||||||    
T  31742423 tgaaaaaacgatatccataa--cacccatcgccactactcaccccaaaagaacacccttgtaaaagaaaca 31742355  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 17853893 - 17853961
Alignment:
Q  52 aaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaacacc 121  Q
    |||||| |||||||||| ||||||||| |||| |||||||||||||| | || | | |||||||||||||    
T  17853893 aaaaacgatatccataa-ccacccatcaccactactcaccccaaaagtagacacctctaaatgaaacacc 17853961  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 12296417 - 12296350
Alignment:
Q  52 aaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaacac 120  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||| ||||||| | ||||||||||||    
T  12296417 aaaaacgatatccataa-ccacccatcgccactactcatcccaaaataacacccctctaaatgaaacac 12296350  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 16952223 - 16952308
Alignment:
Q  69 accacccatcgccaccactcaccccaaaagaacacccatataaatgaaacacccggtcatccacaccaaaattgagtcacatccga 154  Q
    ||||| ||||| ||| ||||||||| ||||||||||| | |||||||||| ||| ||| || |||||||| ||||  |||||||||    
T  16952223 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccga 16952308  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 17022888 - 17022973
Alignment:
Q  69 accacccatcgccaccactcaccccaaaagaacacccatataaatgaaacacccggtcatccacaccaaaattgagtcacatccga 154  Q
    ||||| ||||| ||| ||||||||| ||||||||||| | |||||||||| ||| ||| || |||||||| ||||  |||||||||    
T  17022888 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccga 17022973  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 17060194 - 17060279
Alignment:
Q  69 accacccatcgccaccactcaccccaaaagaacacccatataaatgaaacacccggtcatccacaccaaaattgagtcacatccga 154  Q
    ||||| ||||| ||| ||||||||| ||||||||||| | |||||||||| ||| ||| || |||||||| ||||  |||||||||    
T  17060194 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccga 17060279  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 20572329 - 20572265
Alignment:
Q  52 aaaaacaatatccataaaccacccatcgccaccactcaccccaaaagaacacccatataaatgaaac 118  Q
    |||||| |||||||||| ||||| |||||||| ||||||| ||||||||||||| | ||||||||||    
T  20572329 aaaaacgatatccataa-ccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaac 20572265  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 13098380 - 13098455
Alignment:
Q  21 aaaacagacttcttcacaaaacgacaattgaaaaaacaatatccataaaccacccatcgccaccactcaccccaaaa 97  Q
    |||||||||  ||||||||||| || ||||||||||||| |||||| ||| |||||||||| | ||||| |||||||    
T  13098380 aaaacagaccccttcacaaaaccaccattgaaaaaacaaaatccat-aacaacccatcgccgctactcaacccaaaa 13098455  T

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