View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_541 (Length: 204)
Name: NF9839A_low_541
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_541 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 12224489 - 12224309
Alignment:
| Q |
9 |
gacatcatcaatatatggcctaaaagaataacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcg |
108 |
Q |
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| T |
12224489 |
gacatcatcaatatatgtcctaaaagaataacaaccttcttagaatctaacagaaaatctacattattgaactgaaggtttggcacccaatcaagtgtcg |
12224390 |
T |
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| Q |
109 |
tatataaacttgttgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcttctc |
189 |
Q |
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| T |
12224389 |
tatataaacttgttgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatctc |
12224309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 23316277 - 23316356
Alignment:
| Q |
39 |
acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact |
118 |
Q |
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| T |
23316277 |
acaaccttcttagagtcgaacacaaaatctacattatggaactaaagatttaccacccaatcaagttccgtttataaact |
23316356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 38246231 - 38246311
Alignment:
| Q |
38 |
aacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact |
118 |
Q |
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| T |
38246231 |
aacaaccttcttagaatctaacacaaagtctacattatcaaactgaaggtttgccacccaatcaagtgtcgtacataaact |
38246311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 46210762 - 46210682
Alignment:
| Q |
12 |
atcatcaatatatggcctaaaagaata-acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgc |
91 |
Q |
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|||||| ||||||| ||||||| ||| |||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |
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| T |
46210762 |
atcatctatatatgtcctaaaataatcgacaaccttcttagaatctaaaacaaaatcaacattatcgaaatgaaggtttgc |
46210682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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