View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_543 (Length: 203)
Name: NF9839A_low_543
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_543 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 28609053 - 28609207
Alignment:
| Q |
13 |
tggacatcacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttag |
112 |
Q |
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| T |
28609053 |
tggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttag |
28609152 |
T |
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| Q |
113 |
attgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccat |
167 |
Q |
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| T |
28609153 |
attgacaacgatgaacaacaatgattctatatcttattcagaagttgatgtccat |
28609207 |
T |
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Target: scaffold0002 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 437815 - 437697
Alignment:
| Q |
49 |
tatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatctta |
148 |
Q |
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| T |
437815 |
tatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaacaacaatgattctatatctta |
437716 |
T |
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| Q |
149 |
ttcagaagttgatgtccat |
167 |
Q |
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| T |
437715 |
ttcagaagttaatgtccat |
437697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 13660453 - 13660578
Alignment:
| Q |
42 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
141 |
Q |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
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| Q |
142 |
tatcttattcagaagttgatgtccat |
167 |
Q |
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| T |
13660553 |
tatcatattcggaggttgatgtccat |
13660578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 13652957 - 13653078
Alignment:
| Q |
46 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
145 |
Q |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
146 |
ttattcagaagttgatgtccat |
167 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccat |
13653078 |
T |
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