View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_546 (Length: 202)

Name: NF9839A_low_546
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_546
NF9839A_low_546
[»] chr3 (5 HSPs)
chr3 (26-188)||(19233658-19233821)
chr3 (26-158)||(11584702-11584834)
chr3 (26-137)||(11585721-11585832)
chr3 (29-161)||(19652143-19652275)
chr3 (43-144)||(18649891-18649992)
[»] chr6 (6 HSPs)
chr6 (26-188)||(1308050-1308213)
chr6 (26-187)||(5866248-5866410)
chr6 (125-188)||(16468013-16468077)
chr6 (29-161)||(33753557-33753689)
chr6 (37-89)||(16468077-16468129)
chr6 (72-161)||(17713024-17713113)
[»] chr7 (4 HSPs)
chr7 (26-188)||(34206924-34207087)
chr7 (26-188)||(4164633-4164796)
chr7 (26-187)||(45459907-45460069)
chr7 (29-163)||(45844736-45844870)
[»] chr4 (9 HSPs)
chr4 (26-187)||(19837730-19837892)
chr4 (26-155)||(43469276-43469405)
chr4 (28-153)||(19308972-19309097)
chr4 (31-161)||(7447383-7447513)
chr4 (29-149)||(38655742-38655861)
chr4 (72-161)||(10008619-10008708)
chr4 (43-163)||(17997393-17997513)
chr4 (109-163)||(13841774-13841828)
chr4 (43-144)||(5726121-5726222)
[»] chr5 (5 HSPs)
chr5 (23-163)||(2682361-2682501)
chr5 (72-177)||(842587-842692)
chr5 (29-161)||(3580979-3581111)
chr5 (26-152)||(13640094-13640217)
chr5 (130-163)||(38708190-38708223)
[»] chr8 (2 HSPs)
chr8 (26-163)||(41691143-41691280)
chr8 (34-161)||(17858146-17858273)
[»] chr1 (3 HSPs)
chr1 (29-161)||(32642493-32642625)
chr1 (29-161)||(36192184-36192316)
chr1 (34-161)||(48434772-48434899)
[»] chr2 (5 HSPs)
chr2 (29-160)||(27336018-27336149)
chr2 (26-91)||(3153202-3153266)
chr2 (88-161)||(14164983-14165056)
chr2 (43-163)||(20636920-20637040)
chr2 (92-163)||(17931707-17931778)
[»] scaffold0674 (1 HSPs)
scaffold0674 (43-163)||(499-619)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 19233821 - 19233658
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||    
T  19233821 atcatagaaaaattgcctgggtagactagaatactatttgcacgaataagcgggttggtggattgggggtaaggagattacatgagtttaatattgctct 19233722  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtcc 188  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  19233721 tcttggtaaatggtgttggaggtgtttagtggatagggagggtttatggtttagggtgttgtcc 19233658  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 11584834 - 11584702
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||| || ||||||||||||||||||| |||    
T  11584834 atcatagaaaaattgcttgggtagactggaatactatttgcatgagaaagggggttggtggattgggggtaagaagtttacatgagtttaatattgctct 11584735  T
Q  126 tcttggtaaatggtgttggaggtgtttaatgga 158  Q
    |||||||||||||||||||||||||||||||||    
T  11584734 tcttggtaaatggtgttggaggtgtttaatgga 11584702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 11585721 - 11585832
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||| | ||| ||||||||||||||||||||| ||  |||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  11585721 atcatagaaaaatttcttggctagactggaatactatttgcatgagaaagggggttggtggattgggggtaaggagtttacatgagtttaatattgctct 11585820  T
Q  126 tcttggtaaatg 137  Q
    ||||||||||||    
T  11585821 tcttggtaaatg 11585832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 19652143 - 19652275
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| ||||||||  || |||| | || |||||  |||| ||| |||||||||||||||||  | |||||||| |||| ||||||    
T  19652143 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaagttggtggtttgggggtaaggagattgaaagagtttaacattgctcttct 19652242  T
Q  129 tggtaaatggtgttggaggtgtttaatggatag 161  Q
     | ||||||||||||||||||| || |||||||    
T  19652243 ggctaaatggtgttggaggtgtgtagtggatag 19652275  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 18649891 - 18649992
Alignment:
Q  43 tgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgtt 142  Q
    ||||| || ||||| ||| |||||| || ||||| ||||| ||| ||| ||||| ||||| |  | ||||||||||||||||||||  | ||||||||||    
T  18649891 tgggtggattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgtt 18649990  T
Q  143 gg 144  Q
    ||    
T  18649991 gg 18649992  T

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Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 1308050 - 1308213
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||    
T  1308050 atcatagaaaaattgcctgggtagactggaatactatttgcatgaataagggggctggtggattgggggtaaggagattacttgagtttaatattgctct 1308149  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtcc 188  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  1308150 tcttggtaaatggtgttggaggtgtttagtggatagggagggtttatggtttagggtgttgtcc 1308213  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 5866248 - 5866410
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| ||||||||||| ||| ||||||| | || |||| |||||| ||| ||||||||||||||||| || ||||||||||||| |||    
T  5866248 atcatagaaaaattgcttgggtagactgaaattctatttgtatgagtaagagggttggtggtttgggggtaaggagattgcaggagtttaatattgctct 5866347  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtc 187  Q
    ||||| |||||| ||||||||||||||| ||||||||| ||| || ||||||| |||| ||||    
T  5866348 tcttgctaaatgatgttggaggtgtttagtggatagggagggcttgtggtttaaggtgttgtc 5866410  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 16468077 - 16468013
Alignment:
Q  125 ttcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtcc 188  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||    
T  16468077 ttcttggtaaatggtgttggacgtgtttcatggatagggagggtttatggtttagggtgttgtcc 16468013  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 33753557 - 33753689
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| ||||| |||||| |||| | || ||||| || || ||| |||||||||||||||||  |  ||||||| |||| ||||||    
T  33753557 ataggaaaattgcttgggttgactgaaatactgtttgtatgagtaaggaggctggtggtttgggggtaaggagattgaaaaagtttaacattgctcttct 33753656  T
Q  129 tggtaaatggtgttggaggtgtttaatggatag 161  Q
     | ||||||||||||||||||| || |||||||    
T  33753657 ggctaaatggtgttggaggtgtgtagtggatag 33753689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 16468129 - 16468077
Alignment:
Q  37 attgcctgggtagactggaatactatttgcacgaataagggggttgatggatt 89  Q
    |||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  16468129 attgtctgggtagactggaatactatttgcatgaataagggggttggtggatt 16468077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 17713024 - 17713113
Alignment:
Q  72 taagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggatag 161  Q
    ||||| ||||| ||| |||||||||||||||||  | |||||||| |||| |||| ||   ||||||||||||||||||||| |||||||    
T  17713024 taaggaggttggtggtttgggggtaaggagattgaaagagtttaacattgctcttatttccaaatggtgttggaggtgtttagtggatag 17713113  T

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Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 34207087 - 34206924
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||    
T  34207087 atcatagaaaaattgcctgggtagactggaatactatttgcatgaataagggggctggtggattgggggtaaggagattacttgagtttaatattgctct 34206988  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtcc 188  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||    
T  34206987 tcttggtaaatggtgttggaggtgtctagtggatagggagggtttatggtttagggtgttgtcc 34206924  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 4164796 - 4164633
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||||||| ||| |||    
T  4164796 atcatagaaaaattgcctgggtagactggaatactatttgcatgaataaggaggctggtggattgggggtaaggagattacttgagtttaatgttgctct 4164697  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtcc 188  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||    
T  4164696 tcttggtaaatggtgttggaggtgtctagtggatagggagggtttatggtttagggtgctgtcc 4164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 45460069 - 45459907
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| ||||||||||||||| |||| || | || ||||||| ||| ||| ||||||||||| |||||||| ||||||||||||| |||    
T  45460069 atcatagaaaaattgcttgggtagactggaattctatctgtatgagtaaggggattggtggtttgggggtaagaagattacaagagtttaatattgctct 45459970  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtc 187  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||    
T  45459969 tcttggtaaatggtgttggaggtgtttaatggatagggagggcttgtggtttaaggtgttgtc 45459907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 45844736 - 45844870
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| || | ||||| |||||||| || ||||| |||   ||| |||||||||| ||| ||  | |||||||| |||| |||| |    
T  45844736 ataggaaaattgcttgggttgattagaatattatttgcatgagtaaggaggtcagtggtttgggggtaacgaggttgaaggagtttaacattgctctttt 45844835  T
Q  129 tggtaaatggtgttggaggtgtttaatggataggg 163  Q
     |  ||||||||||||||||||||| |||| ||||    
T  45844836 ggcaaaatggtgttggaggtgtttagtggacaggg 45844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 19837892 - 19837730
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| ||||||||||||||| ||||||| | || ||||||||||| ||| ||||||||||||||||| || ||||||||||||| |||    
T  19837892 atcatagaaaaattgcttgggtagactggaattctatttgtatgagtaagggggttggtggtttgggggtaaggagattgcaggagtttaatattgctct 19837793  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg-gggtttatggtttagggtgatgtc 187  Q
    |||||||||||||||||||||||||||| ||||||||| ||| || ||||||| |||| ||||    
T  19837792 tcttggtaaatggtgttggaggtgtttagtggatagggagggcttgtggtttaaggtgttgtc 19837730  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 43469276 - 43469405
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| ||||| |||||||| |||||||| | |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||    
T  43469276 atcatagaaaaattgcatgggtggactggaacactatttgtatgaataagggggttggtggtttgggggtaaggagattacaagagtttaatattgctct 43469375  T
Q  126 tcttggtaaatggtgttggaggtgtttaat 155  Q
    ||||| ||||||||||||||||||||||||    
T  43469376 tcttgataaatggtgttggaggtgtttaat 43469405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 19308972 - 19309097
Alignment:
Q  28 catagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttc 127  Q
    |||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| ||| |||||||||| ||||||||| || |||||||||| ||| |    
T  19308972 catagaaaaattgcttgggtagactggaattctatttgtatgaataagggggttggtggtttgggggtaaagagattacaagaatttaatattgctctgc 19309071  T
Q  128 ttggtaaatggtgttggaggtgttta 153  Q
    | || |||||||||||||| ||||||    
T  19309072 tgggcaaatggtgttggagatgttta 19309097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 7447513 - 7447383
Alignment:
Q  31 agaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttg 130  Q
    ||||||||||  ||||| ||||||||  ||||||| | |||||||| ||||| ||| |||||||| |||||| || | || ||||| |||| ||||||||    
T  7447513 agaaaaattgtttgggttgactggaactctatttgtatgaataaggaggttggtggtttgggggttaggagaataaaagaatttaacattgctcttcttg 7447414  T
Q  131 gtaaatggtgttggaggtgtttaatggatag 161  Q
     |||||||||||||||||||||| |||||||    
T  7447413 ctaaatggtgttggaggtgtttagtggatag 7447383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38655861 - 38655742
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    ||||||||||||||||||| ||||||||| || |||| | || ||||| ||||| | | |||||||||||||||||  | |||||||| |||| |||||     
T  38655861 atagaaaaattgcctgggttgactggaattctgtttgtatgagtaaggaggttggttgtttgggggtaaggagattgaaagagtttaacattgctcttc- 38655763  T
Q  129 tggtaaatggtgttggaggtg 149  Q
    || ||||||||||||||||||    
T  38655762 tgctaaatggtgttggaggtg 38655742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 10008619 - 10008708
Alignment:
Q  72 taagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggatag 161  Q
    ||||| ||||| ||| |||||||||||||||||  | |||||||| |||| |||||||| ||||| ||||||||| |||||| |||||||    
T  10008619 taaggaggttggtggtttgggggtaaggagattgaaagagtttaacattgctcttcttgctaaatcgtgttggagatgtttagtggatag 10008708  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 17997513 - 17997393
Alignment:
Q  43 tgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgtt 142  Q
    ||||| ||||||||||||||||||| || ||| | ||||| ||| |||||  |||||||  || | || ||||| |||| |||| | |  ||||||||||    
T  17997513 tgggttgactggaatactatttgcatgagtaatgaggttggtggtttgggcataaggaggctaaaggattttaacattgctcttttggcaaaatggtgtt 17997414  T
Q  143 ggaggtgtttaatggataggg 163  Q
    ||||||||||| || ||||||    
T  17997413 ggaggtgtttagtgaataggg 17997393  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 13841828 - 13841774
Alignment:
Q  109 gagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggataggg 163  Q
    ||||||||||||| |||| | |||||||||||||| |||||| || |||||||||    
T  13841828 gagtttaatattgctcttttaggtaaatggtgttgaaggtgtctagtggataggg 13841774  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 5726121 - 5726222
Alignment:
Q  43 tgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgtt 142  Q
    ||||| || ||||| ||| |||||| || ||||| ||||| ||| ||| ||||| ||||| |  | ||||||||||||||||||||  | ||||||||||    
T  5726121 tgggtggattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgtt 5726220  T
Q  143 gg 144  Q
    ||    
T  5726221 gg 5726222  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 2682501 - 2682361
Alignment:
Q  23 agaatcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgt 122  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||| |||  |||||||||| ||||||||||||||||||||||     
T  2682501 agaatcatagaaaaattgcttgggtagattggaatactatttgcatgagtaagggggttggtggtctgggggtaagaagattacatgagtttaatattgc 2682402  T
Q  123 tcttcttggtaaatggtgttggaggtgtttaatggataggg 163  Q
    |||||| | |||||||||||||||||| ||| |||| ||||    
T  2682401 tcttctcgataaatggtgttggaggtgcttagtggacaggg 2682361  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 842692 - 842587
Alignment:
Q  72 taagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggataggggggtttat 171  Q
    ||||| ||||| |||||||||| ||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||||| |||||||| |||||| |    
T  842692 taaggtggttggtggattggggttaaggagattacgggagtttaacattgctcttcttggtaaatggtgttggaagtgtttagtggataggagggtttgt 842593  T
Q  172 ggttta 177  Q
    ||||||    
T  842592 ggttta 842587  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 3580979 - 3581111
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| ||||||||  || |||| | || ||||| ||||| | | |||||||||||||||||  | |||||||| |||| |||| |    
T  3580979 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaggttggtagtttgggggtaaggagattgaaagagtttaacattgctcttat 3581078  T
Q  129 tggtaaatggtgttggaggtgtttaatggatag 161  Q
    || ||||||||||||||||||||||||||||||    
T  3581079 tgctaaatggtgttggaggtgtttaatggatag 3581111  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 13640094 - 13640217
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    ||||||| |||||||  | ||| ||| ||||| |||||||||||| ||||| ||||| ||| ||||||||  |||||||  | |||||||||||||        
T  13640094 atcataggaaaattgtttaggttgacaggaattctatttgcacgagtaaggaggttggtggtttgggggttcggagattgaaggagtttaatattg---c 13640190  T
Q  126 tcttggtaaatggtgttggaggtgttt 152  Q
    |||| ||||||||||||||||||||||    
T  13640191 tcttagtaaatggtgttggaggtgttt 13640217  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 38708223 - 38708190
Alignment:
Q  130 ggtaaatggtgttggaggtgtttaatggataggg 163  Q
    ||||||||||||||||||||| ||||||||||||    
T  38708223 ggtaaatggtgttggaggtgtctaatggataggg 38708190  T

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Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 41691143 - 41691280
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttct 125  Q
    |||||||||||||||| |||||||| |||||  || ||||   |||||||||||||| ||| ||||||||||||||  |||| || |||||||||| |||    
T  41691143 atcatagaaaaattgcttgggtagattggaactctgtttgtctgaataagggggttggtggtttgggggtaaggagtctacaagaatttaatattgctct 41691242  T
Q  126 tcttggtaaatggtgttggaggtgtttaatggataggg 163  Q
    ||| |||||||||||||||||||||||| |||||||||    
T  41691243 tctgggtaaatggtgttggaggtgtttagtggataggg 41691280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 17858146 - 17858273
Alignment:
Q  34 aaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggta 133  Q
    |||||||| ||||| ||||||||  ||||||| | |||||||| ||||| ||| |||||||| |||||| || | || ||||| || | |||||||| ||    
T  17858146 aaaattgcttgggttgactggaactctatttgtatgaataaggaggttggtggtttgggggttaggagaataaaagaatttaacatagctcttcttgcta 17858245  T
Q  134 aatggtgttggaggtgtttaatggatag 161  Q
    |||||||||||||||||||| |||||||    
T  17858246 aatggtgttggaggtgtttagtggatag 17858273  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 32642625 - 32642493
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| || |||||| |  |||||| || ||||| ||||| ||| |||||||||||||||||  | |||||||| | || ||||||    
T  32642625 ataggaaaattgcttgggttgattggaattccgtttgcatgagtaaggaggttggtggcttgggggtaaggagattgaaagagtttaacactgctcttct 32642526  T
Q  129 tggtaaatggtgttggaggtgtttaatggatag 161  Q
    || |||||||||||||||||||||| |||||||    
T  32642525 tgctaaatggtgttggaggtgtttagtggatag 32642493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 36192184 - 36192316
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| || |||||  || |||| | || ||||| ||||| ||| |||||||||||||||||  | |||||||| |||| |||| |    
T  36192184 ataggaaaattgcttgggttgattggaactctgtttgtatgagtaaggaggttggtggtttgggggtaaggagattgaaagagtttaacattgctcttat 36192283  T
Q  129 tggtaaatggtgttggaggtgtttaatggatag 161  Q
    || ||||||||||||||||| |||| |||||||    
T  36192284 tgctaaatggtgttggaggtatttagtggatag 36192316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 48434899 - 48434772
Alignment:
Q  34 aaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggta 133  Q
    |||||||| ||||| || |||||  ||||||| | |||||||| ||||| ||| ||||||||  ||||| || | || |||||  | | |||||||| ||    
T  48434899 aaaattgcgtgggttgattggaactctatttgtatgaataaggaggttggtggtttgggggttcggagaataaaagaatttaacttagctcttcttgcta 48434800  T
Q  134 aatggtgttggaggtgtttaatggatag 161  Q
    |||||||||||||||||||| |||||||    
T  48434799 aatggtgttggaggtgtttagtggatag 48434772  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 27336018 - 27336149
Alignment:
Q  29 atagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttct 128  Q
    |||| |||||||| ||||| ||||||||  |||||||||||| ||||| ||||| | | |||| ||| ||||||||  | || |||||||||| |||| |    
T  27336018 ataggaaaattgcttgggttgactggaactctatttgcacgagtaaggaggttggtagtttggaggtgaggagattgaaggaatttaatattgctctttt 27336117  T
Q  129 tggtaaatggtgttggaggtgtttaatggata 160  Q
      ||||||||||||||||||||||| ||||||    
T  27336118 aagtaaatggtgttggaggtgtttagtggata 27336149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 3153202 - 3153266
Alignment:
Q  26 atcatagaaaaattgcctgggtagactggaatactatttgcacgaataagggggttgatggattgg 91  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  3153202 atcatagaaaaattgtctgggtagactggaatactatttgcatgaataa-ggggttggtggattgg 3153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 14165056 - 14164983
Alignment:
Q  88 ttgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggatag 161  Q
    |||||||||||| ||||    ||||||||||| | ||||||||||||||||||||||||||||||| |||||||    
T  14165056 ttgggggtaaggggattgagagagtttaatatagctcttcttggtaaatggtgttggaggtgtttagtggatag 14164983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 20637040 - 20636920
Alignment:
Q  43 tgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgtt 142  Q
    ||||| ||||||||||||||||||| || ||| | ||||| ||| |||||  |||||||  || | || ||||| |||| |||| | |  ||||||||||    
T  20637040 tgggttgactggaatactatttgcatgagtaatgaggttggtggtttgggcataaggaggctaaaggattttaacattgctcttttggcaaaatggtgtt 20636941  T
Q  143 ggaggtgtttaatggataggg 163  Q
    ||||||||||| || ||||||    
T  20636940 ggaggtgtttagtgaataggg 20636920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 17931778 - 17931707
Alignment:
Q  92 gggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgttggaggtgtttaatggataggg 163  Q
    |||||||||||||  | || ||||||||||||||| |  ||||||||||||||||| || || |||||||||    
T  17931778 gggtaaggagattgaaggaatttaatattgttcttttaagtaaatggtgttggaggcgtctagtggataggg 17931707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 499 - 619
Alignment:
Q  43 tgggtagactggaatactatttgcacgaataagggggttgatggattgggggtaaggagattacatgagtttaatattgttcttcttggtaaatggtgtt 142  Q
    ||||| ||||||||||||||||||| || ||| | ||||| ||| |||||  |||||||  || | || ||||| |||| |||| | |  ||||||||||    
T  499 tgggttgactggaatactatttgcatgagtaatgaggttggtggtttgggcataaggaggctaaaggattttaacattgctcttttggcaaaatggtgtt 598  T
Q  143 ggaggtgtttaatggataggg 163  Q
    ||||||||||| || ||||||    
T  599 ggaggtgtttagtgaataggg 619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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