View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_550 (Length: 202)

Name: NF9839A_low_550
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_550
NF9839A_low_550
[»] chr4 (12 HSPs)
chr4 (11-189)||(4218438-4218616)
chr4 (13-189)||(3801383-3801559)
chr4 (13-180)||(4009793-4009960)
chr4 (22-188)||(4002105-4002271)
chr4 (22-180)||(4025032-4025190)
chr4 (15-176)||(3919908-3920069)
chr4 (13-176)||(3817393-3817556)
chr4 (13-174)||(3986792-3986953)
chr4 (19-111)||(3955723-3955815)
chr4 (13-176)||(3933132-3933295)
chr4 (13-176)||(3809813-3809976)
chr4 (139-189)||(3954558-3954608)
[»] chr5 (1 HSPs)
chr5 (12-188)||(13397746-13397922)
[»] chr8 (2 HSPs)
chr8 (137-169)||(7030801-7030833)
chr8 (43-107)||(7081381-7081445)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 1e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 4218438 - 4218616
Alignment:
Q  11 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  4218438 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagatgttacaatgattctactatcggatcgaaaccaatcaagagttccaaata 4218537  T
Q  111 acatccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 189  Q
    |||||  ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4218538 acatctctagcagaccttcttccttaatatcatcaagaacaataagaaccttcatacggtcaatccttctatgaatatt 4218616  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 3801383 - 3801559
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3801383 atcatcgtcatacacttcattaggaataagtacttgcttatctctacttgttacaattattctactatcagattgaaaccaatcaagagttccaaataac 3801482  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 189  Q
    |||  ||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3801483 atctctagcagaccttcttccttaatatcatcaagatcaataagaaccttcatacggccaatccttctatgaatatt 3801559  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 4009793 - 4009960
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||    
T  4009793 atcatcatcttcaacttcattagcaataagtacttgcttatctctagttgttaaaattattctactatcggatcgaaaccaatcaagagttctaaataac 4009892  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 180  Q
    |||  |||| || ||| ||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  4009893 atctctagctgaccttcttccttaacatcatcaagaacaataagaaccttcatacgaccaatccttct 4009960  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 4002105 - 4002271
Alignment:
Q  22 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 121  Q
    |||||||||||||| ||||||||||||||| ||||||||  |||||||||| |||||||| ||| |||||||||||||||||||||||||||||  ||      
T  4002105 atcaacttcattagtaataagtacttgcttgtctctagtcgttacaattatcctactatcggatcgaaaccaatcaagagttccaaataacatctctatt 4002204  T
Q  122 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat 188  Q
     || ||| ||||| || ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  4002205 tgaccttcttccttaacatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatat 4002271  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 4025032 - 4025190
Alignment:
Q  22 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 121  Q
    |||||||||||||  ||||||||||||| | ||||||||| | |||||||| |||||||||||| ||| ||||||||| |||||||||||||||  || |    
T  4025032 atcaacttcattacaaataagtacttgcatgtctctagttgtgacaattatcctactatcagatagaagccaatcaagtgttccaaataacatctctatc 4025131  T
Q  122 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 180  Q
     || ||| ||||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  4025132 tgaccttcttccttaacgtcatcaagaacaataaggaccttcatacggccaatccttct 4025190  T

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Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 3920069 - 3919908
Alignment:
Q  15 catcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacat 114  Q
    |||||| ||||||||||||||   | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920069 catcatgatcaacttcattagtccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacat 3919970  T
Q  115 ccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 176  Q
    |   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3919969 ctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3919908  T

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Target: chr4; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 3817393 - 3817556
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    ||||||||| ||||||||||||    | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3817393 atcatcatcttcaacttcattattccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataac 3817492  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 176  Q
    |||   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3817493 atctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3817556  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 3986792 - 3986953
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  3986792 atcatcatcgtcaacttcattatcaaaaagtacttgcttatctctggctgttagaattattctactatctgattgaaaccagtcaagagtttcgaataac 3986891  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaat 174  Q
    |||  |||| ||||||  |||| || |||||||||||  |||||||||||||| || |||||    
T  3986892 atctctagctgatcttcgtccttaacatcatcaagaatgataagaaccttcatgcgtccaat 3986953  T

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Target: chr4; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 3955815 - 3955723
Alignment:
Q  19 atcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 111  Q
    ||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3955815 atcatcaacttcattagtaataagtacttgcttgtctctaattgttacaattattctactatcagatcgaaaccaatcaagagttccaaataa 3955723  T

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Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 3933295 - 3933132
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    |||||||| |||||||||||| | || ||| |||||||||| |||| |  |||||||||||||||||||  || ||||||||||||||| ||||||||||    
T  3933295 atcatcattatcaacttcattggtaacaagcacttgcttatttctactggttacaattattctactatctaatcgaaaccaatcaagagatccaaataac 3933196  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 176  Q
    |||  |||||||||| |||| |  | ||||||||||||||||||||| ||||| ||||| ||||    
T  3933195 atctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgcggccgatcc 3933132  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 3809813 - 3809976
Alignment:
Q  13 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 112  Q
    |||||| | |||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| ||||||||||||||  | ||||||||||     
T  3809813 atcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcatattgaaaccaatcacaacttccaaataat 3809912  T
Q  113 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 176  Q
     |    ||| ||||| |  |||  |  ||||||||||| |||||||||||||| ||||||||||    
T  3809913 ttttccagctgatctgtacccttgacgtcatcaagaacgataagaaccttcatgcggccaatcc 3809976  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 3954608 - 3954558
Alignment:
Q  139 atcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 189  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3954608 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatatt 3954558  T

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Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 13397746 - 13397922
Alignment:
Q  12 catcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  13397746 catcatcatcaacaacttcattagcaataagtacttgcttatccctggttgttataattattctactatcagatcgaaaccaatcaagagttccaaataa 13397845  T
Q  112 catccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat 188  Q
    ||||   ||| || ||| ||||  || |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13397846 catctccagctgaccttcttccgtaacatcatcaagaacaataagaaccttcatatggccaatccttctctgaatat 13397922  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 7030833 - 7030801
Alignment:
Q  137 atatcatcaagaacaataagaaccttcatacgg 169  Q
    ||||| |||||||||||||||||||||||||||    
T  7030833 atatcgtcaagaacaataagaaccttcatacgg 7030801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 7081381 - 7081445
Alignment:
Q  43 tacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaa 107  Q
    ||||||||||||| ||||| ||||||| ||||||||| | | |  |||||||||||| |||||||    
T  7081381 tacttgcttatctttagttgttacaatgattctactacctgttccaaaccaatcaagtgttccaa 7081445  T

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