View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_556 (Length: 201)
Name: NF9839A_low_556
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_556 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 31922818 - 31922965
Alignment:
| Q |
37 |
acacatgataatacattattttcaacaaaatctagtcctatgcacgtccttcaagtaaagattaagcatttccttnnnnnnnncacaatagaagaactga |
136 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |
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| T |
31922818 |
acacatgaaaatacattattttcaacaaaatctagtcctatgcacgtccttcaagtaaagattaagcatttcc-taaaaaaaacaaaatagaagaactga |
31922916 |
T |
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| Q |
137 |
acgtgcttctttcaactaagctgagagttctacgccatgtccatgtgat |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922917 |
acgtgcttctttcaactaagctgagagttctacgccatgtccatgtgat |
31922965 |
T |
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