View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_56 (Length: 400)
Name: NF9839A_low_56
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 396
Target Start/End: Complemental strand, 31406930 - 31406543
Alignment:
| Q |
6 |
acatcagatgtgaggacaaaatggatcagcttcaaattctcagacttccttcattggcaaaatttaatgcaggtttcttgcaatgcaatcatagtttcga |
105 |
Q |
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| T |
31406930 |
acatcagatgtgaggacaaaatggatcagcttcaaattctcagacttccttcattggcaaaatttaatgcaggtttcttgcaatgcaatcatagttttga |
31406831 |
T |
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| Q |
106 |
tcatgaatgcattggaccatcgaagacaaattatgcgacacggattaataaggtctgatgcaataacatttattatgaacatttgaattgtttcaattct |
205 |
Q |
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| T |
31406830 |
tcatgaatgcattggaccatcgaagacaaattatgtgacacggattaataaggtctgatacaagaacatttattatgaatatttgaat--ttttatatgg |
31406733 |
T |
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| Q |
206 |
ccatgaagtaaataaactatgcattctgcagatgttagggaagtctaggtctcaatttataaaggaatacaaccaaagacttttcaattggttggtggtg |
305 |
Q |
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| T |
31406732 |
cttggtaacaaatgga-tatgtattctgcagatgttagggaagtctaggtctcaatttataaaggaatacaaccaaagacttttcaattggttggtggtg |
31406634 |
T |
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| Q |
306 |
ttctccctgattatggttgtgattggacgctttgttataaagttcattctgattgaaattggagcatggatactctttatattcttggaga |
396 |
Q |
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| T |
31406633 |
ttctccctgattatggttgtgattggacgctttgttataaagttcattttgattgaaattggagcatggatactctttatatttttggaga |
31406543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 388
Target Start/End: Original strand, 38496013 - 38496169
Alignment:
| Q |
232 |
tgcagatgttagggaagtctaggtctcaatttataaaggaatacaaccaaagacttttcaattggttggtggtgttctccctgattatggttgtgattgg |
331 |
Q |
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|||||||||| | ||||||| ||||| |||||||||||| |||||||| || ||||||||||||||||||| |||||||| | | |||||| |||| |
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| T |
38496013 |
tgcagatgttggtaaagtctaagtctctatttataaaggagtacaaccacaggcttttcaattggttggtggctttctccctcgtcactgttgtggttgg |
38496112 |
T |
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| Q |
332 |
acgctttgttataaagttcattctgattgaaattggagcatggatactctttatatt |
388 |
Q |
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|| ||| |||||||||||||| ||||||||||||||| |||| |||| |||||||| |
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| T |
38496113 |
ccggtttattataaagttcattttgattgaaattggaggatggttactttttatatt |
38496169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 38495748 - 38495810
Alignment:
| Q |
17 |
gaggacaaaatggatcagcttcaaattctcagacttccttcattggcaaaatttaatgcaggt |
79 |
Q |
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| T |
38495748 |
gaggacatgatggaccagcttcaagttctcaagcttccttcaatggcaaaatttaatgcaggt |
38495810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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