View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_67 (Length: 392)
Name: NF9839A_low_67
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 10346709 - 10346934
Alignment:
| Q |
7 |
ttcgtgttgtagcgcaaacaagttgtagagtagtccgtgtgtaaggaaaattgaattacgatgagggcattccataataattaatatcatact-----ta |
101 |
Q |
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| T |
10346709 |
ttcgtgttgtaacgcaaacgagttgtagagttgtccgtgtgtaaggaaaattgaattacgataagggcattccataataattaatatcatactgtactta |
10346808 |
T |
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| Q |
102 |
cttaaatgcattggttggtttatgtgcttgtatgtgtgcttatcagtgaatagacatgatatgttgaattgtgtgcctagttggggttatatgtgattaa |
201 |
Q |
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| T |
10346809 |
cttaaatgcattggttggtttatgtgcttgtatgtgtgcttatccgtgaacagatatgatacgttgaattgtatgctaagttggggttatatgtgattaa |
10346908 |
T |
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| Q |
202 |
tgtgatatgaatatggtagattgctgg |
228 |
Q |
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| T |
10346909 |
tgtgatatgaatatggt-gattgctgg |
10346934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 10344751 - 10344930
Alignment:
| Q |
10 |
gtgttgtagcgcaaacaagttgtagagtagtccgtgtgtaaggaaaattgaattacgatgagggcattccataataattaatatcat-acttacttaaat |
108 |
Q |
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| T |
10344751 |
gtgttgtagagcatacgagttgtagagttgtacatgtttaaggaaaattgaaatacgataagggcattctctagcaat----atcattacttacttaaat |
10344846 |
T |
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| Q |
109 |
gcatt-ggttggtttatgtgcttgtatgtgtgcttatcagtgaatagacatgatatgttgaattgtgtgcctagttggggttata |
192 |
Q |
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| T |
10344847 |
gcatttggttggtttatgtgctt-tatgtgtgcttatatgtgaataaacatgatatgctgaattgtgtgcctagttggggttata |
10344930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 10346967 - 10347052
Alignment:
| Q |
307 |
ctatgttgattgcagatggtatggtttactagaatgaacccacctaaattctacaaaagaattattgagtcagcgaggcattgtga |
392 |
Q |
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| T |
10346967 |
ctatgttgattgcacaggatatggttaattagaatgaacccacctaaattctacaaaagaattattgagtcagcgaggcgttgtga |
10347052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 10344937 - 10345007
Alignment:
| Q |
307 |
ctatgttgattgcagatggtatggtttactagaatgaacccacctaaattctacaaaagaattattgagtc |
377 |
Q |
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| T |
10344937 |
ctatgttgattgcacgaggtatggttaactagtatggacccacctaaattctacgaaaaatgtattgagtc |
10345007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 3385270 - 3385217
Alignment:
| Q |
111 |
attggttggtttatgtgcttgtatgtgtgcttatcagtgaatagacatgatatg |
164 |
Q |
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| T |
3385270 |
attggttgatttatgtgcttgtatgtgtgcttgtttgtgaataaacatcatatg |
3385217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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