View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_68 (Length: 391)

Name: NF9839A_low_68
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_68
NF9839A_low_68
[»] chr8 (8 HSPs)
chr8 (14-389)||(39899604-39899978)
chr8 (60-120)||(17792544-17792604)
chr8 (60-123)||(24937588-24937651)
chr8 (60-120)||(27172254-27172314)
chr8 (85-120)||(36672016-36672051)
chr8 (64-120)||(38210664-38210720)
chr8 (64-120)||(39646643-39646699)
chr8 (85-121)||(43460715-43460751)
[»] chr3 (7 HSPs)
chr3 (60-133)||(50029744-50029817)
chr3 (60-120)||(8966271-8966331)
chr3 (85-120)||(44365974-44366009)
chr3 (85-122)||(35171195-35171232)
chr3 (75-136)||(53516572-53516633)
chr3 (64-120)||(35137784-35137840)
chr3 (60-120)||(45635687-45635747)
[»] chr4 (7 HSPs)
chr4 (60-120)||(1433813-1433873)
chr4 (64-104)||(28967876-28967916)
chr4 (85-125)||(408428-408468)
chr4 (89-125)||(27736596-27736632)
chr4 (76-120)||(46215778-46215822)
chr4 (88-120)||(52589440-52589472)
chr4 (64-120)||(56303182-56303238)
[»] chr1 (8 HSPs)
chr1 (60-120)||(17525777-17525837)
chr1 (64-123)||(24511923-24511982)
chr1 (85-120)||(35305517-35305552)
chr1 (76-129)||(26010939-26010992)
chr1 (64-120)||(30320896-30320952)
chr1 (80-120)||(32144675-32144715)
chr1 (60-112)||(46707358-46707410)
chr1 (76-120)||(51977864-51977908)
[»] chr7 (7 HSPs)
chr7 (88-123)||(21699295-21699330)
chr7 (85-120)||(23561476-23561511)
chr7 (75-120)||(18990443-18990488)
chr7 (64-120)||(7574557-7574613)
chr7 (85-121)||(19503125-19503161)
chr7 (76-120)||(20438822-20438866)
chr7 (64-120)||(28264756-28264812)
[»] chr5 (4 HSPs)
chr5 (85-120)||(3056761-3056796)
chr5 (62-113)||(38354745-38354796)
chr5 (76-120)||(2318431-2318475)
chr5 (76-120)||(13091269-13091313)
[»] scaffold0625 (1 HSPs)
scaffold0625 (75-120)||(6272-6317)
[»] chr2 (3 HSPs)
chr2 (75-120)||(33413061-33413106)
chr2 (87-120)||(34438193-34438226)
chr2 (76-120)||(37909714-37909758)
[»] chr6 (1 HSPs)
chr6 (76-120)||(15383209-15383253)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 39899978 - 39899604
Alignment:
Q  14 agataaagaagcaggtgagtgtgcaaagctgaattattattagctaaatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||| ||||| |||||||||||||||||    
T  39899978 agataaagaagcaggtgagtgtgcaaagctgaattattattagctagatctataaatttgaaaagcaggactaccgatacacattaatttacgagtgtac 39899879  T
Q  114 catagaaatttctaaataatatacatgagtttggttaatcaacatacaaagctgcaacttgtgcacatacaacaattgtgagctgccacggtaagcttga 213  Q
    | ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39899878 cctagaaatttctaaataatatacatgagtttgattaattaacatgcaaagctgcaacgtgtgcacatacaacaattgtgagctgccacggtaagcttga 39899779  T
Q  214 taggcctagacaaccgcttaaatttttcaattcatttgcttttacaaccgctttgattaaatttctttaacatgatgaattttaatgtttcnnnnnnnag 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||       ||    
T  39899778 taggcctagacaaccgcttaaatttttcaattcttttgcttttacaaccgctttgattaaatttctttaacatgatgaattttaacgattctttttttag 39899679  T
Q  314 ggaaaatttattatgaaatacttattttcattataaaaacaatattatattccccgaaacactttgcctctactct 389  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39899678 gg-aaatttattatgaaatacttattttcattataaaaacaatattatattccccgaaacactttgcctctcctct 39899604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 17792544 - 17792604
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||||||||  ||| |||| ||||| |||||||||||||| |||||||||||||||    
T  17792544 aatgtataaatttaggaagcaggagtaccgatacaccttaatttatgagtgtaccatagaa 17792604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 24937651 - 24937588
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaaatt 123  Q
    ||||||||||||||| ||| |||| ||||  ||||||||||||||  |||||||||||||||||    
T  24937651 aatgtataaatttaagaagcaggagtaccaatacaccttaatttataagtgtaccatagaaatt 24937588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 27172254 - 27172314
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||||||||  ||| |||| ||||| ||||||||||||||  ||||||||||||||    
T  27172254 aatgtataaatttaggaagcaggagtaccgatacaccttaatttattagtgtaccatagaa 27172314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 36672051 - 36672016
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36672051 taccggtacacctcaatttacgagtgtaccatagaa 36672016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 38210664 - 38210720
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| ||| |||| || |||||||||||| |||||||||||||| |||||    
T  38210664 tataaaattaagaagcaggagtatcggtacaccttattttacgagtgtaccgtagaa 38210720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 39646699 - 39646643
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| |||||||| ||||||||||||||| ||||  |||||||| |||||    
T  39646699 tataaaattaagaagtaggagtaccggtacaccttattttataagtgtaccgtagaa 39646643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 43460715 - 43460751
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaaa 121  Q
    |||||||||||||||||||| | ||||||||||||||    
T  43460715 taccggtacaccttaatttaagggtgtaccatagaaa 43460751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 50029817 - 50029744
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaaatttctaaataat 133  Q
    ||||||||||||||  ||| |||| ||||| ||||||||| |||| ||||||||||||||| |||| |||||||    
T  50029817 aatgtataaatttaggaagcaggagtaccgatacaccttagtttatgagtgtaccatagaagtttccaaataat 50029744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 8966271 - 8966331
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||| |||||||||  ||| |||| |||||||||||||||||||| ||||||||| |||||    
T  8966271 aatgcataaatttaggaagcaggagtaccggtacaccttaatttatgagtgtaccgtagaa 8966331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 44365974 - 44366009
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||||||||||||||||| |||||||||||||    
T  44365974 taccggtacaccttaatttacgggtgtaccatagaa 44366009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 35171232 - 35171195
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaaat 122  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  35171232 taccggtacaccgtaatttacgggtgtaccatagaaat 35171195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 53516633 - 53516572
Alignment:
Q  75 aaagtaggactaccggtacaccttaatttacgagtgtaccatagaaatttctaaataatata 136  Q
    |||||| || ||||||||||||||||||| |  |||||||||||||||| || ||| |||||    
T  53516633 aaagtaagagtaccggtacaccttaatttgcaggtgtaccatagaaattcctcaattatata 53516572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 35137784 - 35137840
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| ||| |||| || |||||||||||| |||||||||||||| |||||    
T  35137784 tataaaattaagaagcaggagtatcggtacaccttattttacgagtgtaccgtagaa 35137840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 45635747 - 45635687
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||||||||| |||| ||   ||||||||||| |||||||| ||||||||| |||||    
T  45635747 aatgtataaatttagaaagcagaggtaccggtacactttaatttatgagtgtaccgtagaa 45635687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 1433873 - 1433813
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||| |||||||||  ||| |||| |||||||||||||||||||| |||||||||||||||    
T  1433873 aatgcataaatttaggaagcaggaataccggtacaccttaatttatgagtgtaccatagaa 1433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 28967876 - 28967916
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaattta 104  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  28967876 tataaatttaaaaagcaggagtaccggtacaccttaattta 28967916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 408428 - 408468
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaaatttc 125  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  408428 taccggtacacctcaatttacgagtgtaccgtagaagtttc 408468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 27736632 - 27736596
Alignment:
Q  89 ggtacaccttaatttacgagtgtaccatagaaatttc 125  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27736632 ggtacaccttaatttacgagtgtaccgtagaagtttc 27736596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 46215822 - 46215778
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||| ||||||| |||||||||| |||||    
T  46215822 aagtaggagtaccggtacacattaatttgcgagtgtaccgtagaa 46215778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 52589440 - 52589472
Alignment:
Q  88 cggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||| |||||||||||||||||||||||    
T  52589440 cggtacaccgtaatttacgagtgtaccatagaa 52589472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 56303182 - 56303238
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| ||| |||| |||| ||||||||||||| | |||| |||||||||||||||    
T  56303182 tataaaattataaagcaggagtaccggtacacctcactttatgagtgtaccatagaa 56303238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 17525777 - 17525837
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||||||||  ||| |||| ||||| |||||||||||||| || ||||||||||||    
T  17525777 aatgtataaatttaggaagcaggagtaccgatacaccttaatttatgaatgtaccatagaa 17525837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 24511923 - 24511982
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaaatt 123  Q
    ||||||||||  ||| | || ||||||||||||| |||||||||||||||| ||||||||    
T  24511923 tataaatttatgaagcaagagtaccggtacacctcaatttacgagtgtaccgtagaaatt 24511982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 35305517 - 35305552
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||||||||||||||||||||||||| |||||    
T  35305517 taccggtacaccttaatttacgagtgtaccgtagaa 35305552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26010992 - 26010939
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaaatttctaaa 129  Q
    |||||||| ||||||||||||||||||| || ||||||| ||||| || |||||    
T  26010992 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaagttcctaaa 26010939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 30320952 - 30320896
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| ||| |||| || |||||||||||| |||||||||||||| |||||    
T  30320952 tataaaattaagaagcaggagtatcggtacaccttattttacgagtgtaccgtagaa 30320896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 32144715 - 32144675
Alignment:
Q  80 aggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||| ||||| |||||||||||||| |||||||||||||||    
T  32144715 aggaataccgatacaccttaatttatgagtgtaccatagaa 32144675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 46707410 - 46707358
Alignment:
Q  60 aatgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgta 112  Q
    |||| |||||||||  ||| |||| |||||||||||||||||||| |||||||    
T  46707410 aatgcataaatttaggaagcaggagtaccggtacaccttaatttatgagtgta 46707358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 51977908 - 51977864
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||    
T  51977908 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 51977864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 21699330 - 21699295
Alignment:
Q  88 cggtacaccttaatttacgagtgtaccatagaaatt 123  Q
    |||||||||||||||| |||||||||||||||||||    
T  21699330 cggtacaccttaatttgcgagtgtaccatagaaatt 21699295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 23561476 - 23561511
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||||||| ||||||||||||||||||||||    
T  23561476 taccggtacacctcaatttacgagtgtaccatagaa 23561511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 18990443 - 18990488
Alignment:
Q  75 aaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||| ||||||||||||||||||| || ||||||| |||||    
T  18990443 aaagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 18990488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 7574613 - 7574557
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| ||| |||| || |||||||||||| |||||||||||||| |||||    
T  7574613 tataaaattaagaagcaggagtatcggtacaccttattttacgagtgtaccgtagaa 7574557  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 19503161 - 19503125
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaaa 121  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  19503161 taccggtacatcttaatttaagagtgtaccatagaaa 19503125  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 20438866 - 20438822
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||    
T  20438866 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 20438822  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 28264812 - 28264756
Alignment:
Q  64 tataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||| |||| ||| |||| || |||||||||||| |||||||||||||| |||||    
T  28264812 tataaaattaagaagcaggagtatcggtacaccttattttacgagtgtaccgtagaa 28264756  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 3056761 - 3056796
Alignment:
Q  85 taccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||||||| |||||||||||||||||||||||    
T  3056761 taccggtacaccgtaatttacgagtgtaccatagaa 3056796  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 38354796 - 38354745
Alignment:
Q  62 tgtataaatttaaaaagtaggactaccggtacaccttaatttacgagtgtac 113  Q
    ||||||||||||||||  |||| ||||| |||||||||||||| ||||||||    
T  38354796 tgtataaatttaaaaaacaggagtaccgatacaccttaatttatgagtgtac 38354745  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 2318475 - 2318431
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||    
T  2318475 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 2318431  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 13091269 - 13091313
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||    
T  13091269 aagtaagagtaccggtacaccttaatttacgggtgtaccgtagaa 13091313  T

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Target: scaffold0625 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 6317 - 6272
Alignment:
Q  75 aaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||| ||||||||||||||||||| || ||||||| |||||    
T  6317 aaagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 6272  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 33413061 - 33413106
Alignment:
Q  75 aaagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    ||||||||| |||||||||||||||||||||  ||||||| |||||    
T  33413061 aaagtaggagtaccggtacaccttaatttacaggtgtaccgtagaa 33413106  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 34438226 - 34438193
Alignment:
Q  87 ccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||||||||||||||| |||||||||||||    
T  34438226 ccggtacaccttaatttacgggtgtaccatagaa 34438193  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 37909714 - 37909758
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||    
T  37909714 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 37909758  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 15383253 - 15383209
Alignment:
Q  76 aagtaggactaccggtacaccttaatttacgagtgtaccatagaa 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||    
T  15383253 aagtaggagtaccggtacaccttaatttgcgggtgtaccgtagaa 15383209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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