View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_69 (Length: 389)
Name: NF9839A_low_69
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_69 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 142 - 383
Target Start/End: Original strand, 49082848 - 49083089
Alignment:
| Q |
142 |
cagattatcatgcctcctcaaaacataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttccgtgg |
241 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49082848 |
cagattaccatgcctcctcaaaatataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttctgtgg |
49082947 |
T |
|
| Q |
242 |
cttccacacacaaaaatattgaatgcagtgnnnnnnntagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaata |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082948 |
cttccacacacaaaaatattgaatgcagtgaaaaaaatagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaata |
49083047 |
T |
|
| Q |
342 |
ggattgttagatatgtcagtttcagactgttagttgtgaaac |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49083048 |
ggattgttagatatgtcagtttcagactgttagttgtgaaac |
49083089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 49082741 - 49082812
Alignment:
| Q |
14 |
gaacctgtggcagcatgtgtggagaagaaatactactgtatgtcaatgtcaatatacttacttatattccaatccaac |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
49082741 |
gaacttgtggcagcatgtgtggagaagaaatactactgt------atgtcaatatacttatttatattccaatccaac |
49082812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University