View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_74 (Length: 382)
Name: NF9839A_low_74
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_74 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 92 - 382
Target Start/End: Original strand, 10597666 - 10597956
Alignment:
| Q |
92 |
cgcatgttgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaattgctgctgatgcatt |
191 |
Q |
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| T |
10597666 |
cgcatgttgattctgcattaagtgagagaacaaagaccacaatgctaccaaatggattaatcaatgaggatagcagtcctgtaatggctgctgatgcatc |
10597765 |
T |
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| Q |
192 |
ggattccacaagtaatttttctgacaaaacggattcagaatgcaaatcaaaatcagaggtcagtgacattcctattgtggttgataaacttgatacgact |
291 |
Q |
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| T |
10597766 |
ggattccacaagtgatcttgttgacaaaacggatttggaatgcaaatcaaagtcagaggtcatcgacattcctattgtggttgataaacttgataccact |
10597865 |
T |
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| Q |
292 |
gctttgaaagaatcacctgtgggagctaacaatgatgatatcagtgacaattctgcaagtgaagggttagattctgatatgcatgcattga |
382 |
Q |
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| T |
10597866 |
gctttgaaagactcacctgtgggagctaacgatgataatatcagtgacaattctgcaagtgaagggttagattctgatatgcatgcattga |
10597956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 10597539 - 10597664
Alignment:
| Q |
1 |
tcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgttg |
100 |
Q |
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| T |
10597539 |
tcagaaaaagattcatctgaaggtactagtgatggaagtcccaaggaacagttctgtatgaaggatgatgatggtagaagtgaatctcggtcgcatgttg |
10597638 |
T |
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| Q |
101 |
attctgcatcaagtgagagagcaaag |
126 |
Q |
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| T |
10597639 |
attctgcatcaagtgagagaacaaag |
10597664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 224 - 381
Target Start/End: Original strand, 53388427 - 53388584
Alignment:
| Q |
224 |
attcagaatgcaaatcaaaatcagaggtcagtgacattcctattgtggttgataaacttgatacgactgctttgaaagaatcacctgtgggagctaacaa |
323 |
Q |
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| T |
53388427 |
attcagaatgcaaatcaaaatcagaggtcagcgacattcctattgtggttgataaatttgatacgactgctttgaaagaattacccgtgggagcaaacaa |
53388526 |
T |
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| Q |
324 |
tgatgatatcagtgacaattctgcaagtgaagggttagattctgatatgcatgcattg |
381 |
Q |
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| T |
53388527 |
tgatgatattagtgatgattcttcaagtgaagggttagattctgatatgcatgcattg |
53388584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 53388250 - 53388425
Alignment:
| Q |
1 |
tcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgttg |
100 |
Q |
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||||||||||||||||||||||||| | || | ||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53388250 |
tcagaaaaagattcatctgaaggtattagtgagggaagtcccaaggaacaattatgtatgaaggatgatgacggtggaagtgaatctcggtcgcatgttg |
53388349 |
T |
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| Q |
101 |
attctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaat |
176 |
Q |
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| T |
53388350 |
attctacgtcaagtgagagaacaaagcctacaatgctaccagatggattaatcaatgaggattgtagtcctgtaat |
53388425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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