View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_75 (Length: 380)
Name: NF9839A_low_75
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_75 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 374
Target Start/End: Original strand, 29056156 - 29056524
Alignment:
| Q |
6 |
aagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctcca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29056156 |
aagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatgctgtgcttctcca |
29056255 |
T |
|
| Q |
106 |
cttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056256 |
cttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaa |
29056355 |
T |
|
| Q |
206 |
accaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056356 |
accaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatga |
29056455 |
T |
|
| Q |
306 |
gtatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaattatcta |
374 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29056456 |
gaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaataatcta |
29056524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 32848826 - 32848736
Alignment:
| Q |
17 |
caggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctccact |
107 |
Q |
| |
|
|||||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||||||||| || |||| ||| ||||| ||||| |
|
|
| T |
32848826 |
caggagttggcgccaaagtatcataaggcacaacaacttcatcagttggcgtctggatcttactccattctacatgctgcgcttcaccact |
32848736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 2811322 - 2811253
Alignment:
| Q |
270 |
ttttcatccatttgttgcagattcttacaaaaatgagtatctgaaaataatttaaaaaatgtttcaaatg |
339 |
Q |
| |
|
|||||||| |||||| || ||||||| |||| |||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
2811322 |
ttttcatctgtttgttacaaattcttaaaaaattgagaatctgaaaataatctaaaaactgtttcaaatg |
2811253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University