View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_78 (Length: 373)

Name: NF9839A_low_78
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_78
NF9839A_low_78
[»] chr5 (2 HSPs)
chr5 (6-371)||(17774791-17775156)
chr5 (323-371)||(14320920-14320968)
[»] chr4 (4 HSPs)
chr4 (290-355)||(3735336-3735401)
chr4 (323-371)||(20266711-20266760)
chr4 (152-212)||(25125491-25125551)
chr4 (324-357)||(7620511-7620544)
[»] chr1 (2 HSPs)
chr1 (279-355)||(31969764-31969840)
chr1 (290-368)||(32269967-32270045)
[»] chr2 (1 HSPs)
chr2 (322-357)||(19323037-19323072)
[»] chr3 (1 HSPs)
chr3 (156-371)||(27720429-27720645)
[»] chr6 (2 HSPs)
chr6 (152-234)||(2900649-2900730)
chr6 (323-368)||(30230427-30230472)
[»] chr7 (1 HSPs)
chr7 (153-234)||(33440334-33440414)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 17775156 - 17774791
Alignment:
Q  6 gtttcgtgttacagatccagtttcaaatccaatttgtactcagacacttcttttgaataatttgtggttgtgctttaatttgtttcgatgcttcacgatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  17775156 gtttcgtgttacagatccagtttcaaatccaatttgtactccaacacttcttttgaataatttggggttgtgctttaatttgtttcaatgcttcatgatt 17775057  T
Q  106 gaattgagactgtatggctagaaatggtcatgtactcaatgtgatttcattcactgtgtttgagttggaatgtggagctcgaaagagtcgttaagcttgc 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  17775056 gaattgagactgtatggctagaaatggttatgtactcaatgtgatttcattcactatgtttgagttggaatgtggagctcgaaagagtcgttaagcttga 17774957  T
Q  206 tgctattcgttgtaaggagttgatggtacgtggaccttcttctgtgttgccggacaatccattcacggaactttagacctttctttagtttgaggattaa 305  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  17774956 tgttattcgttgtaaggagttgatggtacgtggtccttcttctgtgtttacggacaatccattcacggaactttagacctttgtttagtttgaggataaa 17774857  T
Q  306 atagaggcaagtctacttgtgttgttttaattttttgtattacccgtttgggtcaacctacacttt 371  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17774856 atagaggcaattccacttgtgttgttttaattttttgtattacccgtttgggtcaacctacacttt 17774791  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 14320968 - 14320920
Alignment:
Q  323 tgtgttgttttaattttttgtattacccgtttgggtcaacctacacttt 371  Q
    ||||||||||||| ||||||||| || |||||||||| |||||||||||    
T  14320968 tgtgttgttttaaatttttgtataactcgtttgggtcgacctacacttt 14320920  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 3735336 - 3735401
Alignment:
Q  290 ttagtttgaggattaaatagaggcaagtctacttgtgttgttttaattttttgtattacccgtttg 355  Q
    ||||||| ||||||||||||||||   || |||||||||||||||  |||||||||||||||||||    
T  3735336 ttagttttaggattaaatagaggcggatccacttgtgttgttttatatttttgtattacccgtttg 3735401  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 20266760 - 20266711
Alignment:
Q  323 tgtgttgttttaattttttgtattacccgttt-gggtcaacctacacttt 371  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  20266760 tgtgttgttttaattttttgtattatcagtttggggtcaacctacacttt 20266711  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 25125551 - 25125491
Alignment:
Q  152 tcattcactgtgtttgagttggaatgtggagctcgaaagagtcgttaagcttgctgctatt 212  Q
    ||||||||| ||||||  ||||| ||||| ||||||||| ||||||||||||| |||||||    
T  25125551 tcattcactttgtttggtttggattgtggggctcgaaagggtcgttaagcttgttgctatt 25125491  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 7620544 - 7620511
Alignment:
Q  324 gtgttgttttaattttttgtattacccgtttggg 357  Q
    |||||||||||||||||| |||||||||||||||    
T  7620544 gtgttgttttaattttttttattacccgtttggg 7620511  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 31969764 - 31969840
Alignment:
Q  279 tagacctttctttagtttgaggattaaatagaggcaagtctacttgtgttgttttaattttttgtattacccgtttg 355  Q
    |||||||||  ||||||| |||||||||||||||||| || | ||||||| |||||| | |||||||||| ||||||    
T  31969764 tagacctttgattagttttaggattaaatagaggcaaatccatttgtgttattttaaatatttgtattacgcgtttg 31969840  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 32269967 - 32270045
Alignment:
Q  290 ttagtttgaggattaaatagaggcaagtctacttgtgttgttttaattttttgtattacccgtttgggtcaacctacac 368  Q
    ||||||| |||||||| ||||||||| || || || |||||||||||||| | ||||| ||| ||||||| ||||||||    
T  32269967 ttagttttaggattaattagaggcaaatcaacctgagttgttttaattttctatattaaccgcttgggtcgacctacac 32270045  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 19323072 - 19323037
Alignment:
Q  322 ttgtgttgttttaattttttgtattacccgtttggg 357  Q
    ||||||||||||||||||||||||||||||||||||    
T  19323072 ttgtgttgttttaattttttgtattacccgtttggg 19323037  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 371
Target Start/End: Complemental strand, 27720645 - 27720429
Alignment:
Q  156 tcactgtgtttgagttggaatgtggagctcgaaagagtcgttaagcttgctgctattcgttgtaaggagttgatggtacgtggaccttcttctgtgttgc 255  Q
    ||||| ||||||| ||||| ||||| |||| ||| | | ||| | |||||||| |||||||| |  ||||||||||||| |||| |   ||| |||| |     
T  27720645 tcactatgtttgacttggactgtggggctcaaaatacttgtttaccttgctgccattcgttgcagtgagttgatggtacatggatccgtttccgtgtcga 27720546  T
Q  256 cggacaatccattcacggaactttagacctttctttagtttgaggattaaatagaggcaagtctacttgtgttgttttaatt-ttttgtattacccgttt 354  Q
    ||||  |||||||||| ||| |  ||||| ||  ||||||| ||| |||| ||||| ||  || || | || | |||||||  |||||||||||||||||    
T  27720545 cggatgatccattcaccgaattgaagaccattgattagttttagggttaattagagacatatccacctatgatattttaatagttttgtattacccgttt 27720446  T
Q  355 gggtcaacctacacttt 371  Q
    |||| ||||||||||||    
T  27720445 gggtaaacctacacttt 27720429  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 2900730 - 2900649
Alignment:
Q  152 tcattcactgtgtttgagttggaatgtggagctcgaaagagtcgttaagcttgctgctattcgttgtaaggagttgatggtac 234  Q
    |||||||||  |||||| ||||| ||||  ||||||||  |||||| |||||||||| ||| |||||| ||||||||||||||    
T  2900730 tcattcacttcgtttgatttggactgtgaggctcgaaatggtcgtttagcttgctgccatt-gttgtagggagttgatggtac 2900649  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 30230472 - 30230427
Alignment:
Q  323 tgtgttgttttaattttttgtattacccgtttgggtcaacctacac 368  Q
    |||||| |||||| ||||||||| |||||||||||||||| |||||    
T  30230472 tgtgttattttaaatttttgtatcacccgtttgggtcaacttacac 30230427  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 33440334 - 33440414
Alignment:
Q  153 cattcactgtgtttgagttggaatgtggagctcgaaagagtcgttaagcttgctgctattcgttgtaaggagttgatggtac 234  Q
    |||||||| ||| ||| ||||| ||||  ||||||||| |||||| | |||||||||||| |||||| |||||||| |||||    
T  33440334 cattcactttgtgtgatttggattgtgcggctcgaaagggtcgtttaacttgctgctatt-gttgtagggagttgaaggtac 33440414  T

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