View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_80 (Length: 372)
Name: NF9839A_low_80
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 10142090 - 10141735
Alignment:
| Q |
14 |
acatcattgaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatg |
113 |
Q |
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| T |
10142090 |
acatcattgaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatg |
10141991 |
T |
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| Q |
114 |
ggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgt |
213 |
Q |
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| T |
10141990 |
ggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgt |
10141891 |
T |
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| Q |
214 |
gatttgtaaatgaaacaaaacaaatgtatgaataagaataaag--ttgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaa |
311 |
Q |
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| T |
10141890 |
gatttgtaaatgacacaaaacaaatgtatgaataagaataaagctgtgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaa |
10141791 |
T |
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| Q |
312 |
tgcttgtaagatgttacttgtattccatcttccctatcatttgatgtccatctcat |
367 |
Q |
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| T |
10141790 |
tgcttgtaagatgttacttgtattccatcttccctatcatatcatgtccatctcat |
10141735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 10135288 - 10135316
Alignment:
| Q |
258 |
tgtgtcaaacttggacagtacttgaactt |
286 |
Q |
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| T |
10135288 |
tgtgtcaaacttggacagtacttgaactt |
10135316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 40685042 - 40685101
Alignment:
| Q |
106 |
cgaggatgggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaa |
165 |
Q |
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| T |
40685042 |
cgaggatgggctaaaactagcttcttctttggtaacttgttggaaaggttcttggcttaa |
40685101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 40684961 - 40685017
Alignment:
| Q |
22 |
gaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtacca |
78 |
Q |
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| T |
40684961 |
gaagcacttcgtaaagaaatcggcaagacaatgatggtagatgtgaagaaagtacca |
40685017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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