View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_81 (Length: 371)
Name: NF9839A_low_81
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_81 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 9805016 - 9804675
Alignment:
| Q |
14 |
agtatggtgtttgaaatcactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggatt |
113 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
9805016 |
agtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggatt |
9804918 |
T |
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| Q |
114 |
accttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgat |
213 |
Q |
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| T |
9804917 |
acctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgat |
9804818 |
T |
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| Q |
214 |
gtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaat |
313 |
Q |
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| T |
9804817 |
gtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaat |
9804718 |
T |
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| Q |
314 |
tttgtttagggtttcaagagaatgagaaatgaggatgggagga |
356 |
Q |
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| T |
9804717 |
tgtgtttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 9817941 - 9817777
Alignment:
| Q |
14 |
agtatggtgtttgaaatcactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggatt |
113 |
Q |
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| T |
9817941 |
agtatgatgtttgaaatcactcacataaaagacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgatt |
9817844 |
T |
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| Q |
114 |
accttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
180 |
Q |
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| T |
9817843 |
accttttttgcccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 9817693 - 9817563
Alignment:
| Q |
241 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
340 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
341 |
aatgaggatgggaggattattttgtttgatt |
371 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgatt |
9817563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 238 - 370
Target Start/End: Complemental strand, 9817577 - 9817445
Alignment:
| Q |
238 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
337 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
338 |
agaaatgaggatgggaggattattttgtttgat |
370 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgat |
9817445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
248 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
347 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
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| Q |
348 |
atgggagga |
356 |
Q |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 11950 - 11788
Alignment:
| Q |
14 |
agtatggtgtttgaaatcactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaa-gtttggat |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||| || |||||||| ||| ||| |
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| T |
11950 |
agtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgtgaaaaaaagttaagat |
11853 |
T |
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| Q |
113 |
taccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
177 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11852 |
taccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 370
Target Start/End: Complemental strand, 11708 - 11572
Alignment:
| Q |
234 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
333 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
334 |
aatgagaaatgaggatgggaggattattttgtttgat |
370 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgat |
11572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 356
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
238 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
337 |
Q |
| |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
338 |
agaaatgaggatgggagga |
356 |
Q |
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||||||||||||||||||| |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
26 |
gaaatcactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
125 |
Q |
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|||| |||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
126 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
180 |
Q |
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||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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