View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_82 (Length: 370)
Name: NF9839A_low_82
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_82 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 370
Target Start/End: Original strand, 536146 - 536510
Alignment:
| Q |
6 |
tttggtgttaggtgattacgatttacaagtaactgtgggtttattgttttaccttgcacggaatatcgcatagttcctatgtttatcggaaactgttgtg |
105 |
Q |
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| T |
536146 |
tttgatgttaggtgattacgatttacaagtaattgtgggtttattgttttaccttgcacggaatatcgcatagttcctatgtttatcggaaactgttgtg |
536245 |
T |
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| Q |
106 |
agtcatcgattagccttggatgtttcataaaaagcttggctgattttcttgttagggacggaatgatgtttggtgattatgatttacgagtaattgtggg |
205 |
Q |
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| T |
536246 |
agtcatcgattagccttggatgtttcataaaaagcttggctgattttcttgttagggacggattgatgtttggtgattatgatttacgagtaattgtggg |
536345 |
T |
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| Q |
206 |
tttattttcttaccttacacagatattgagtagttcatatgtttttgggaaaccatagtgacaagcaaaattctaatttcatcgattagcgagcatagta |
305 |
Q |
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| T |
536346 |
tttattttcttaccttacacagatattgagtagttcatatgtttttgggaaaccatagtgacaagcaaaattctaatttcatcgattagcgaacatagta |
536445 |
T |
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| Q |
306 |
aacatatcttactcacaacagtttgacggaagattgtgcttcccagttaaggctgcttcttttga |
370 |
Q |
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| T |
536446 |
aacatatcttactcacaacagtttgacggaagattgtgcttcccagttaaggctgcttcttttga |
536510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 320
Target Start/End: Complemental strand, 22009858 - 22009547
Alignment:
| Q |
6 |
tttggtgttaggtgattacgatttacaagtaactgtgggtttatt--gttttaccttgcacggaatatcgcatagttcctatgtttatcggaaactgttg |
103 |
Q |
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| T |
22009858 |
tttggtgttaggagatcacaatttacaagtgattgtggattttttttgttttaccttgcacggaatattgcgtagttcctatgtttctctgaaactgttg |
22009759 |
T |
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| Q |
104 |
tgagtcatcgattagccttggatgtttcataaaaagcttggctgattttcttgttagggacggaatgatgtttggtgattatgatttacgagtaattgtg |
203 |
Q |
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| T |
22009758 |
tgagtcattgatgagccttggatgtttcataaaaaacttagatgattttctcgttagggatatattg--gtttagtgattatgaggtactagtaattgtg |
22009661 |
T |
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| Q |
204 |
ggtttattttcttaccttacacagatattgagtagttcatatgtttttgggaaaccatagtgacaagcaaaattctaatttcatcgattagcgagcatag |
303 |
Q |
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| T |
22009660 |
ggtttattttcttaccttacagagataattcgtagttcctatgttcct-ggaaacc--agtgacaaacaaagttctaatttcatcgactagcgagcatag |
22009564 |
T |
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| Q |
304 |
taaacatatcttactca |
320 |
Q |
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| T |
22009563 |
taagcatttctcactca |
22009547 |
T |
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