View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_83 (Length: 367)

Name: NF9839A_low_83
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_83
NF9839A_low_83
[»] chr7 (21 HSPs)
chr7 (177-367)||(7403408-7403598)
chr7 (6-116)||(7403667-7403777)
chr7 (177-287)||(3920999-3921108)
chr7 (185-318)||(11685332-11685465)
chr7 (186-318)||(13036177-13036309)
chr7 (11-107)||(3920847-3920943)
chr7 (189-275)||(30108857-30108943)
chr7 (247-317)||(48311414-48311484)
chr7 (186-318)||(34784308-34784440)
chr7 (189-312)||(34692431-34692554)
chr7 (239-298)||(37114304-37114363)
chr7 (196-318)||(4321382-4321504)
chr7 (185-305)||(24226874-24226994)
chr7 (242-318)||(48850924-48851000)
chr7 (239-318)||(23904971-23905050)
chr7 (239-318)||(38549895-38549974)
chr7 (184-318)||(6605033-6605167)
chr7 (240-318)||(22155495-22155573)
chr7 (240-318)||(22211410-22211488)
chr7 (189-275)||(48302444-48302530)
chr7 (189-318)||(45464854-45464983)
[»] chr2 (16 HSPs)
chr2 (177-316)||(2359382-2359520)
chr2 (189-305)||(363369-363485)
chr2 (239-318)||(26581350-26581429)
chr2 (185-275)||(40152256-40152346)
chr2 (189-318)||(11021825-11021954)
chr2 (189-318)||(28247845-28247974)
chr2 (186-298)||(17948622-17948734)
chr2 (189-275)||(38149750-38149836)
chr2 (186-291)||(4047653-4047758)
chr2 (185-305)||(39456455-39456575)
chr2 (183-318)||(42517875-42518010)
chr2 (189-298)||(7744953-7745062)
chr2 (185-318)||(34400628-34400761)
chr2 (186-231)||(2359542-2359587)
chr2 (240-305)||(16764227-16764292)
chr2 (19-107)||(2359658-2359746)
[»] chr8 (26 HSPs)
chr8 (189-318)||(15684048-15684177)
chr8 (185-316)||(11719746-11719877)
chr8 (188-318)||(11790497-11790627)
chr8 (186-318)||(17807313-17807445)
chr8 (185-317)||(10770636-10770768)
chr8 (239-318)||(15562761-15562840)
chr8 (187-298)||(29693984-29694095)
chr8 (8-114)||(15683873-15683979)
chr8 (185-318)||(42943062-42943195)
chr8 (189-318)||(9186303-9186432)
chr8 (183-312)||(10269213-10269342)
chr8 (186-299)||(22273555-22273668)
chr8 (189-318)||(40019448-40019577)
chr8 (196-312)||(28432518-28432634)
chr8 (186-318)||(41824261-41824393)
chr8 (239-305)||(3152338-3152404)
chr8 (185-299)||(41041032-41041146)
chr8 (240-305)||(8608613-8608678)
chr8 (186-318)||(13484831-13484963)
chr8 (186-318)||(26239029-26239161)
chr8 (260-318)||(40338208-40338266)
chr8 (42-107)||(11719608-11719673)
chr8 (240-305)||(33707581-33707646)
chr8 (186-274)||(25402522-25402610)
chr8 (186-274)||(25707031-25707119)
chr8 (241-305)||(27692454-27692518)
[»] chr4 (19 HSPs)
chr4 (187-303)||(28100865-28100981)
chr4 (185-318)||(2691684-2691817)
chr4 (186-318)||(20820290-20820422)
chr4 (183-305)||(11254376-11254498)
chr4 (184-314)||(26397587-26397716)
chr4 (189-318)||(39190489-39190618)
chr4 (189-318)||(39922677-39922806)
chr4 (189-318)||(42879576-42879705)
chr4 (33-112)||(26397784-26397863)
chr4 (8-107)||(28100691-28100790)
chr4 (189-318)||(5485722-5485851)
chr4 (186-299)||(11641744-11641857)
chr4 (189-318)||(39084822-39084951)
chr4 (189-275)||(32653344-32653430)
chr4 (197-275)||(43778689-43778767)
chr4 (191-275)||(10544694-10544778)
chr4 (186-318)||(54387538-54387670)
chr4 (197-318)||(230748-230868)
chr4 (241-305)||(43520726-43520790)
[»] chr1 (20 HSPs)
chr1 (186-318)||(18058121-18058253)
chr1 (9-116)||(42558085-42558192)
chr1 (189-318)||(5784537-5784666)
chr1 (185-304)||(2870726-2870845)
chr1 (185-318)||(31237139-31237272)
chr1 (33-116)||(3369582-3369665)
chr1 (251-318)||(42558303-42558370)
chr1 (189-275)||(11152837-11152923)
chr1 (41-107)||(35009542-35009608)
chr1 (191-299)||(3369732-3369840)
chr1 (239-299)||(51894941-51895001)
chr1 (186-318)||(52642225-52642357)
chr1 (239-318)||(37087773-37087851)
chr1 (183-318)||(50554498-50554633)
chr1 (240-318)||(45045286-45045364)
chr1 (185-318)||(3012175-3012308)
chr1 (240-305)||(8169183-8169248)
chr1 (245-318)||(25172702-25172775)
chr1 (240-305)||(33599593-33599658)
chr1 (240-305)||(34776944-34777009)
[»] scaffold0722 (2 HSPs)
scaffold0722 (185-312)||(4446-4572)
scaffold0722 (12-112)||(4279-4379)
[»] chr5 (12 HSPs)
chr5 (186-318)||(27077124-27077256)
chr5 (185-318)||(1344479-1344612)
chr5 (189-304)||(24497759-24497874)
chr5 (185-275)||(6116610-6116700)
chr5 (239-305)||(41494208-41494274)
chr5 (189-318)||(42619581-42619710)
chr5 (185-297)||(28821748-28821860)
chr5 (33-116)||(27077321-27077404)
chr5 (240-308)||(17575540-17575608)
chr5 (187-305)||(8540954-8541072)
chr5 (240-305)||(24540171-24540236)
chr5 (186-318)||(34328467-34328600)
[»] chr3 (18 HSPs)
chr3 (177-291)||(35861823-35861938)
chr3 (187-318)||(32842721-32842852)
chr3 (239-318)||(24846210-24846289)
chr3 (260-318)||(23876036-23876094)
chr3 (186-318)||(30598658-30598790)
chr3 (239-318)||(51686014-51686093)
chr3 (189-267)||(37865676-37865754)
chr3 (239-305)||(46113738-46113804)
chr3 (189-318)||(41945769-41945898)
chr3 (239-286)||(13466804-13466851)
chr3 (247-318)||(42282136-42282207)
chr3 (240-305)||(2661523-2661588)
chr3 (240-305)||(7883703-7883768)
chr3 (186-318)||(17516609-17516741)
chr3 (240-305)||(35904199-35904264)
chr3 (241-318)||(43766685-43766762)
chr3 (240-305)||(53188151-53188216)
chr3 (186-318)||(21350258-21350390)
[»] chr6 (8 HSPs)
chr6 (187-318)||(14337973-14338104)
chr6 (187-318)||(17936208-17936339)
chr6 (185-308)||(11356799-11356922)
chr6 (189-318)||(17950853-17950982)
chr6 (189-318)||(35174674-35174803)
chr6 (189-317)||(4289710-4289838)
chr6 (186-318)||(7371453-7371585)
chr6 (186-318)||(20524971-20525102)
[»] scaffold0345 (1 HSPs)
scaffold0345 (185-308)||(1160-1283)
[»] scaffold0564 (1 HSPs)
scaffold0564 (186-318)||(9534-9666)
[»] scaffold0920 (1 HSPs)
scaffold0920 (239-299)||(1114-1174)
[»] scaffold0058 (1 HSPs)
scaffold0058 (240-305)||(6852-6917)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 7403598 - 7403408
Alignment:
Q  177 atacatcagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattg 276  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7403598 atacatcggctctttctttcccaaatctattaaattggaaccctagttttacaatatgtaatctagagtccaaaatctccaagatttcttccattaattg 7403499  T
Q  277 atgacaacgttcttctccaattctaaaaatttcaaaacctaannnnnnnnnattgaaatctgaaaaccaaaaatccccaaaatttctttga 367  Q
    |||||||||||||||||||||||| |||||||||||||||||          ||||||||||||| |||||||||||||||||||| ||||    
T  7403498 atgacaacgttcttctccaattctgaaaatttcaaaacctaattttttttttttgaaatctgaaatccaaaaatccccaaaatttcattga 7403408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 7403777 - 7403667
Alignment:
Q  6 tatggtgttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7403777 tatggtgttaacgatgctgacatggtgtgttaacctctcagaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaa 7403678  T
Q  106 ttaccaaggac 116  Q
    |||||||||||    
T  7403677 ttaccaaggac 7403667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 3920999 - 3921108
Alignment:
Q  177 atacatcagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattg 276  Q
    ||||||| |||||||||| ||| ||||||| ||||||||||| || || ||||||  |||||||| ||| ||||||| |||| ||||||||||||||||     
T  3920999 atacatcggctctttcttccccgaatctataaaattgaaacc-taattctacaatctgtaatctatagtacaaaatccccaaaatttcttccattaattc 3921097  T
Q  277 atgacaacgtt 287  Q
    |||||||||||    
T  3921098 atgacaacgtt 3921108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 11685465 - 11685332
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||  ||||||| ||| |||||| ||||||| |||||||||  |||||||| | |||||||||||||| ||||||| || |||||   |  |||    
T  11685465 gctctttctcccccaaatatataaaattggaaccctaattttacaatctgtaatctacactccaaaatctccaaaatttctttcaataattagaggtaac 11685366  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||  ||||||||||||    
T  11685365 gttcttcaccaattcaaaaagcttcaaaacctaa 11685332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 13036309 - 13036177
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| || |||  ||||| |||  || | ||||||| ||||||| |||| |||||||||||||||||||||||| |    
T  13036309 ctctttcttccccaaatatataaatttggaatccttattttataatttgtcacctagagttcaaaatccccaaaatttcttccattaattgatgacaaag 13036210  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || |||| ||||    
T  13036209 ttcttccccaattcaaaaaacttaaaaatctaa 13036177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 3920847 - 3920943
Alignment:
Q  11 tgttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    |||||||| ||||||| |||   |||||||||||||| | ||| ||||||||||||| |||||| || |||||||| |  |||||||||||||||||    
T  3920847 tgttaacggtgctgacgtgggcagttaacctctcacatgtcttgtcatgtcaaatgctacacaagcacagactaatatgatcgaaagtgacaaaatt 3920943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 30108857 - 30108943
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| |||||    
T  30108857 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataatt 30108943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 48311484 - 48311414
Alignment:
Q  247 caaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaaccta 317  Q
    |||||||  ||| ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||    
T  48311484 caaaatcctcaaaatttctttcattaattgatgacaaagttcttccccaattcaaaaaatttaaaaaccta 48311414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 34784308 - 34784440
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| |||||| ||||||| |||||||||   ||||||| | |||||||||||||| |||| |  || |||||  ||  ||||    
T  34784308 ctctttcttccccaaatatataaaattggaaccctaattttacaatctttaatctacactccaaaatctccaaaatttatgtcaataattagtggtaacg 34784407  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| | |||| |||||    
T  34784408 ttcttccccaattcaaaaaactccaaaccctaa 34784440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 34692554 - 34692431
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||   ||||||| | ||||||||||||||  ||||||||| |||||  ||   ||||||    
T  34692554 tttcttccccaaatatataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataattagtggtcacgttc 34692455  T
Q  289 ttctccaattctaaaaatttcaaa 312  Q
    ||| |||| || ||||||| ||||    
T  34692454 ttccccaaatcaaaaaattccaaa 34692431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 37114304 - 37114363
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaatt 298  Q
    ||||||| |||||||||| ||||||||||||| |||||||| ||| ||||||| ||||||    
T  37114304 ctagagttcaaaatctcccagatttcttccataaattgatgtcaatgttcttccccaatt 37114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 318
Target Start/End: Original strand, 4321382 - 4321504
Alignment:
Q  196 cccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctcca 295  Q
    ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||| ||  ||||||||| ||||| | |   ||||||||| |||    
T  4321382 cccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctcaaaattttcttccaataattaagggtcacgttcttcccca 4321481  T
Q  296 attctaaaaatttcaaaacctaa 318  Q
    | || ||||||| |||| |||||    
T  4321482 aatcaaaaaattgcaaaccctaa 4321504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 24226874 - 24226994
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||||||||||| | ||| |||  |  |  |||||| ||||||| || | ||||||||||| |||||||| |||     
T  24226874 gctctttcttccccaaatatataaatttgaaaccctaatgttataatttgccacttagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 24226973  T
Q  285 gttcttctccaattctaaaaa 305  Q
    ||||||| ||||||| |||||    
T  24226974 gttcttccccaattcaaaaaa 24226994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 48850924 - 48851000
Alignment:
Q  242 gagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||| ||||||  |||| |||||||||||||||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  48850924 gagttcaaaattcccaaaatttcttccattaattgatgccaaagttcttccccaattcaaaaaacttaaaaccctaa 48851000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 23904971 - 23905050
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| || | ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  23904971 ctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 23905050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 38549895 - 38549974
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| |||| ||||||||||| |||||||  ||| ||||||| ||||||| ||||| || ||| |||||    
T  38549895 ctagagttcaaaatccccaaaatttcttccatgaattgataccaaagttcttccccaattcaaaaaacttaaaatcctaa 38549974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 6605167 - 6605033
Alignment:
Q  184 agctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaa 283  Q
    |||| |||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| |||    
T  6605167 agctatttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaa 6605068  T
Q  284 cgttcttctccaattctaaaaatttcaaaacctaa 318  Q
     ||| ||| ||||||| ||||| || ||| |||||    
T  6605067 tgtttttccccaattcaaaaaacttaaaaccctaa 6605033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 22155573 - 22155495
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| || | ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  22155573 tagagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 22155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 22211488 - 22211410
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| || | ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  22211488 tagagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 22211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 48302444 - 48302530
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||| ||||||| ||| |||||||||| ||| |||||||||  ||| |||| | ||||||||||||||  || |||||| |||||    
T  48302444 tttcttccccaaatatataaaattgaaactctaattttacaatgtgtattctacactccaaaatctccaaatttgcttccaataatt 48302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 45464983 - 45464854
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| | ||||| ||| |||||| ||| ||| |||||||||  |||||||| | ||||||||||||||  |||||| || ||||| | |   ||||||    
T  45464983 tttcttcctcaaatatataaaattggaactctaattttacaatgtgtaatctacactccaaaatctccaaattttctttcaataattaagggtcacgttc 45464884  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  45464883 ttccccaaatcaaaaaattacaaaccctaa 45464854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 316
Target Start/End: Original strand, 2359382 - 2359520
Alignment:
Q  177 atacatcagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattg 276  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||||| |||||||||  || ||||||||||||||||| |||| ||||||  |||||||||    
T  2359382 atacaacagctttttcttccccaaatctataaaattgaaaccctaattttacaatttgtcatctagagtccaaaatc-ccaaaatttctatcattaattg 2359480  T
Q  277 atgacaacgttcttctccaattctaaaaatttcaaaacct 316  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  2359481 atgacaacgttcttccccaattctaaaaacttcaaaacct 2359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 363485 - 363369
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||| |||||||| | |||||||||  ||| |||||||||| |||||  ||  |||||||    
T  363485 tttcttccccaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaatcctcaaaatttcttccaataattagtggtaacgttc 363386  T
Q  289 ttctccaattctaaaaa 305  Q
    ||||||||||| |||||    
T  363385 ttctccaattcaaaaaa 363369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 26581350 - 26581429
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||  |||| |||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||||||||    
T  26581350 ctagagttcaaaattcccaaaatttcttccattaattgatgacaacgctgttccccaattcaaaaaacttcaaaacctaa 26581429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 40152346 - 40152256
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||||||||||||||||||| |||||||||||| | |||| ||||   | |||||  ||||||||||||||  ||||||||||||||||    
T  40152346 gctctttctttcccaaatctataaaattgaaacccaaatttttcaatctctcatctacggtccaaaatctccacaatttcttccattaatt 40152256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 11021825 - 11021954
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  11021825 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 11021924  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  11021925 ttccccaaatcaaaaaattgcaaaccctaa 11021954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 28247974 - 28247845
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  28247974 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 28247875  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  28247874 ttccccaaatcaaaaaattgcaaaccctaa 28247845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 17948734 - 17948622
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||   ||||| | | ||||||||  |||| | |||||||| |||||| ||  ||||    
T  17948734 ctctttctttcccaaatgtataaaattgaaaccctaattttacaatctttaatccacactccaaaattcccaaaaattcttccaataattggtggtaacg 17948635  T
Q  286 ttcttctccaatt 298  Q
    |||||| ||||||    
T  17948634 ttcttccccaatt 17948622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 38149836 - 38149750
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||||||||||| ||| |||||| ||||||| |||||||||  |||||||| | || |||||||||||  ||||||||| |||||    
T  38149836 tttctttcccaaatatataaaattggaaccctaattttacaatgtgtaatctacactctaaaatctccaaattttcttccaataatt 38149750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 4047758 - 4047653
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| |||  || ||||||||| |||| || | || | |||||||||||||  |||||  ||    
T  4047758 ctctttcttccccaaatctataaaattgaaaccctaattttataatttgtcatctagagttcaaagtcccaaaaacttcttccattaatatatgacggcg 4047659  T
Q  286 ttcttc 291  Q
    ||||||    
T  4047658 ttcttc 4047653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 39456575 - 39456455
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||||||||||| ||| || ||||||| ||| | ||| |||  || | ||||||| ||||||| |  | ||||||||||| |||||||| |||     
T  39456575 gctctttctttcccaaatatataaatttgaaactctaatgttataatttgtcacctagagttcaaaatccctcaaatttcttccatgaattgatgtcaat 39456476  T
Q  285 gttcttctccaattctaaaaa 305  Q
    ||||||| ||||||| |||||    
T  39456475 gttcttccccaattcaaaaaa 39456455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 42517875 - 42518010
Alignment:
Q  183 cagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgaca 282  Q
    |||||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| ||||||| || |  |||||||||| |||||||| ||    
T  42517875 cagctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaattttcttccatgaattgatgtca 42517974  T
Q  283 acgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    | ||||||| ||||||| ||||| || ||| |||||    
T  42517975 atgttcttccccaattcaaaaaacttaaaaccctaa 42518010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 7745062 - 7744953
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||||||||||| ||| |||||||||||||| |||||||||   ||||| | | ||||||||  |||| | |||||||| |||||  ||  |||||||    
T  7745062 tttctttcccaaatgtataaaattgaaaccctaattttacaatctttaatccacactccaaaattcccaaaaattcttccaataattagtggtaacgttc 7744963  T
Q  289 ttctccaatt 298  Q
    ||| ||||||    
T  7744962 ttccccaatt 7744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 34400628 - 34400761
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | | ||||| ||||||| || | ||||||||||| |||||||| |||     
T  34400628 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacccagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 34400727  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||| || ||| |||||    
T  34400728 gttcttccccaattcaaaaaacttaaaaccctaa 34400761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 2359587 - 2359542
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaat 231  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||    
T  2359587 ctctttcttccccaaatctattaaattggaaccctaatttgacaat 2359542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 16764292 - 16764227
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  16764292 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 16764227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2359746 - 2359658
Alignment:
Q  19 atgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    |||||||| || | ||| |||||||||||||| ||  ||||||||||||||||||| || | | |||||| |   ||||||||||||||    
T  2359746 atgctgacgtgttttgtaaacctctcacaagatttgacatgtcaaatgccacacaagcagatattaatttggctaaaagtgacaaaatt 2359658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 15684048 - 15684177
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||||||| |||||| ||||| | |||||||||  |||||||||||| ||||||  | || |||||||||||||||||||||||||||||    
T  15684048 tttcttccccaaatctataaaattggaaccccaattttacaatctgtaatctagagttcaaaattccaaaaatttcttccattaattgatgacaacgttc 15684147  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| ||||||||||||||||||||||||||    
T  15684148 ttccccaattctaaaaatttcaaaacctaa 15684177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 11719746 - 11719877
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||||||| |||||| ||||| | |||||||||   | | ||||||||||||||| |||| |||||||||||||||||||||||||    
T  11719746 gctctttcttccccaaatctataaaattggaaccccaattttacaatttatcacctagagtccaaaatccccaaaatttcttccattaattgatgacaac 11719845  T
Q  285 gttcttctccaattctaaaaatttcaaaacct 316  Q
    ||||||| ||||||| ||||| || |||||||    
T  11719846 gttcttccccaattcaaaaaactttaaaacct 11719877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 11790627 - 11790497
Alignment:
Q  188 ctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgtt 287  Q
    ||||||| | ||||||||| ||| || |||| |  |||||||||  || ||||| ||||||||||| |||| ||||||||||||||||||||||||| ||    
T  11790627 ctttcttcctcaaatctataaaaatggaaccttgattttacaatttgttatctatagtccaaaatccccaaaatttcttccattaattgatgacaacctt 11790528  T
Q  288 cttctccaattctaaaaatttcaaaacctaa 318  Q
    |||| | ||||||||||| ||||||||||||    
T  11790527 cttcccaaattctaaaaacttcaaaacctaa 11790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 17807313 - 17807445
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| | ||||| ||| || ||| ||||||| ||||| |||  || | ||||||| ||||||| |||| | |||||||||||||||||||||||     
T  17807313 ctctttcttccacaaatatataaatttggaaccctaattttataatttgtcacctagagttcaaaatccccaaaaattcttccattaattgatgacaaca 17807412  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| ||||||||||||    
T  17807413 ttcttccccaattcaaaaaacttcaaaacctaa 17807445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 10770636 - 10770768
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||||||| |||||| | ||||| |||||||||  ||||||   | ||||||||| |||| |||||||  ||||||| ||||||||    
T  10770636 gctctttcttccccaaatctataaaattggagccctaattttacaatctgtaatccgcactccaaaatccccaaaatttctttaattaattaatgacaac 10770735  T
Q  285 gttcttctccaattctaaaaatttcaaaaccta 317  Q
    ||| |||  |||||||||||| |||||| ||||    
T  10770736 gtttttcctcaattctaaaaacttcaaacccta 10770768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 15562761 - 15562840
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||| ||||||| ||||| || |||||||||    
T  15562761 ctagagttcaaaatccccaaaatttcttccattaattgatgacacagttcttccccaattcaaaaaacttaaaaacctaa 15562840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 29694095 - 29693984
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    |||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||  ||||||||||||||| |||||||||||| ||    
T  29694095 tctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatccgcaagatttcttccatgaattgatgacaaagt 29693996  T
Q  287 tcttctccaatt 298  Q
    ||||||||||||    
T  29693995 tcttctccaatt 29693984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 15683873 - 15683979
Alignment:
Q  8 tggtgttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    ||||||||| | || |||| |||| |||||||||||| |||| |||  ||||||| ||| ||||||| || ||| ||||||||| |||||||||||||||    
T  15683873 tggtgttaaaggtgttgacgtggtctgttaacctctcccaaggcttgccatgtcagatgtcacacaagcagagattaattttgtagaaagtgacaaaatt 15683972  T
Q  108 accaagg 114  Q
     ||||||    
T  15683973 gccaagg 15683979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 42943195 - 42943062
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||||||||||| ||| || ||| ||||||| | ||| |||  || |  | |||| |||||||||| | ||||||||||| |||||||| |||     
T  42943195 gctctttctttcccaaatatataaatttggaaccctaatgttataatttgtcacattgagttcaaaatctcccaaatttcttccatgaattgatgtcaat 42943096  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||||||||||| ||||| || ||| |||||    
T  42943095 gttcttctccaattcaaaaaacttaaaaccctaa 42943062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 9186432 - 9186303
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| | | |||||||||||||| |||||||||  |||||||| | ||||||||| |  | |||||||||| |||||  ||| |||||||    
T  9186432 tttcttccccaaatatttaaaattgaaaccctaattttacaatctgtaatctacactccaaaatcccataaatttcttccaataattagtgataacgttc 9186333  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||  ||||||| ||||| || ||| |||||    
T  9186332 ttacccaattcaaaaaactttaaaccctaa 9186303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 10269342 - 10269213
Alignment:
Q  183 cagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgaca 282  Q
    ||||| |||||||||||||| ||| |||||| || |||| |||||||||    |||||| |  |||||||| |||| |||||||||| |||||  ||  |    
T  10269342 cagctatttctttcccaaatatataaaattggaagcctaattttacaatctacaatctacacaccaaaatccccaaaatttcttccaataattagtggta 10269243  T
Q  283 acgttcttctccaattctaaaaatttcaaa 312  Q
    ||||||||| ||||||| ||||| ||||||    
T  10269242 acgttcttccccaattcaaaaaacttcaaa 10269213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 22273668 - 22273555
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||||| | ||||||||||| |||||||| ||| |    
T  22273668 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaatg 22273569  T
Q  286 ttcttctccaattc 299  Q
    |||||| |||||||    
T  22273568 ttcttccccaattc 22273555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 40019448 - 40019577
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| |  |||||||||||||  ||||||||| ||||| | |   ||||||    
T  40019448 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacaccccaaaatctccaaattttcttccaataattaagggtcacgttc 40019547  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  40019548 ttccccaaatcaaaaaattgcaaaccctaa 40019577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 28432518 - 28432634
Alignment:
Q  196 cccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctcca 295  Q
    ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||||| |||    
T  28432518 cccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttcttcccca 28432617  T
Q  296 attctaaaaatttcaaa 312  Q
    | || ||||||| ||||    
T  28432618 aatcaaaaaattgcaaa 28432634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 41824261 - 41824393
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| |||  | ||||||||||| | ||| |||  || |  |||||| ||||||| |||| ||||||||||| |||||||| ||| |    
T  41824261 ctctttcttccccaaatatatatatttgaaaccctaatgttataatttgtcacgtagagttcaaaatccccaaaatttcttccatgaattgatgtcaaag 41824360  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  41824361 ttcttccccaattcaaaaaacttaaaaccctaa 41824393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 3152338 - 3152404
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    ||||||| ||||||| |||| ||||||||||| |||||||| ||| ||||||| ||||||| |||||    
T  3152338 ctagagttcaaaatccccaaaatttcttccatgaattgatgccaaagttcttccccaattcaaaaaa 3152404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 41041032 - 41041146
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| |||     
T  41041032 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 41041131  T
Q  285 gttcttctccaattc 299  Q
    ||||||| |||||||    
T  41041132 gttcttccccaattc 41041146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 8608613 - 8608678
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  8608613 tagagttcaaaatctccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 8608678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 13484831 - 13484963
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| |||| || | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| ||| |    
T  13484831 ctctttcttccccaaatatataaatttggaaccttaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 13484930  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  13484931 ttcttccccaattcaaaaaacttaaaaccctaa 13484963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 26239029 - 26239161
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| || |||| |||||| ||| ||||||| | ||| |||  || |  |||||| ||||||| |||| ||||||||||| |||||| | ||| |    
T  26239029 ctctttcttccctaaatatattaatttggaaccctaatgttataatttgtcacatagagttcaaaatccccaaaatttcttccatgaattgacgccaaag 26239128  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  26239129 ttcttccccaattcaaaaaacttaaaaccctaa 26239161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 40338208 - 40338266
Alignment:
Q  260 atttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||||||| |||||||| ||| ||||||| ||||||| |||||||| ||| |||||    
T  40338208 atttcttccatgaattgatgtcaatgttcttccccaattcaaaaaatttaaaaccctaa 40338266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 11719608 - 11719673
Alignment:
Q  42 ctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    |||||||||||| |||||||| ||| |||||||  || || |||||| | ||||||||||||||||    
T  11719608 ctcacaagacttgtcatgtcagatgtcacacaagaaaggagtaatttggccgaaagtgacaaaatt 11719673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 33707581 - 33707646
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  33707581 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 33707646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 25402610 - 25402522
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaat 274  Q
    ||||||||| ||||||| ||| |||||||||||||  || ||| ||  |||||||| | ||||||||  |||| |||||||||| ||||    
T  25402610 ctctttcttccccaaatatataaaattgaaaccctgattgtactatctgtaatctacactccaaaataaccaaaatttcttccaataat 25402522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 25707119 - 25707031
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaat 274  Q
    ||||||||| ||||||| ||| |||||||||||||  || ||| ||  |||||||| | ||||||||  |||| |||||||||| ||||    
T  25707119 ctctttcttccccaaatatataaaattgaaaccctgattgtactatctgtaatctacactccaaaataaccaaaatttcttccaataat 25707031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 27692518 - 27692454
Alignment:
Q  241 agagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    ||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  27692518 agagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 27692454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 28100865 - 28100981
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    |||||||| ||||||||||| |||||||||| ||| || ||||||   ||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  28100865 tctttcttccccaaatctataaaattgaaactctaattgtacaatttataatctagagtccaaaattcccaaaatttcttccattaattgatgacaacgt 28100964  T
Q  287 tcttctccaattctaaa 303  Q
    ||||| |||||||||||    
T  28100965 tcttccccaattctaaa 28100981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 2691684 - 2691817
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||||||| ||||||||||||||||||||||||     
T  2691684 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctccaaaatttcttccattaattgatgacaaa 2691783  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
     |||||| ||||||| ||||| || ||| |||||    
T  2691784 attcttccccaattcaaaaaacttaaaaccctaa 2691817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 20820290 - 20820422
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||||| ||||| ||| || ||| ||||||| ||||| |||  || | ||| |||  |||||| |||| |||||||||| ||||||||||||| |    
T  20820290 ctctttctttctcaaatatataaatttggaaccctaattttataatttgtcacctaaagtttaaaatccccaaaatttcttccactaattgatgacaaag 20820389  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||||||||||| ||||| || |||||||||    
T  20820390 ttcttctccaattcaaaaaacttaaaaacctaa 20820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 11254376 - 11254498
Alignment:
Q  183 cagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgaca 282  Q
    |||||||||||| ||||||| ||| || ||||||||||| | ||| |||  || | ||||||| ||||||| || | | |||||||||||||||||| ||    
T  11254376 cagctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaaattcttccattaattgatgtca 11254475  T
Q  283 acgttcttctccaattctaaaaa 305  Q
    | ||||||| ||||||| |||||    
T  11254476 atgttcttccccaattcaaaaaa 11254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 26397716 - 26397587
Alignment:
Q  184 agctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaa 283  Q
    ||||||||||| | ||||||||| |||||  ||||||| ||| | |||  || ||||||||| ||||||| |||| ||||||||  ||||||||||||||    
T  26397716 agctctttcttcctcaaatctataaaattagaaccctaattt-ataatttgtcatctagagttcaaaatccccaaaatttcttctgttaattgatgacaa 26397618  T
Q  284 cgttcttctccaattctaaaaatttcaaaac 314  Q
     ||||||| ||||||| ||||| | ||||||    
T  26397617 tgttcttccccaattccaaaaactccaaaac 26397587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 39190618 - 39190489
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  39190618 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39190519  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  39190518 ttccccaaatcaaaaaattgcaaaccctaa 39190489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 39922806 - 39922677
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  39922806 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39922707  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  39922706 ttccccaaatcaaaaaattacaaaccctaa 39922677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 42879576 - 42879705
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  42879576 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 42879675  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  42879676 ttccccaaatcaaaaaattgcaaaccctaa 42879705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 26397863 - 26397784
Alignment:
Q  33 tgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaattaccaa 112  Q
    ||||||||||||||||| ||| |||||||| ||| ||||||| ||| || |||||| | |||||||||||||||| ||||    
T  26397863 tgttaacctctcacaaggcttgtcatgtcagatgtcacacaagcaaggattaatttggccgaaagtgacaaaatttccaa 26397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 28100691 - 28100790
Alignment:
Q  8 tggtgttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    ||||||||| | ||||||  |||| ||||||||||||||||   || |||||||| ||| ||||||| || |||||||||| | ||||||||||||||||    
T  28100691 tggtgttaatggtgctgatgtggtatgttaacctctcacaaagtttgtcatgtcagatgacacacaagcagagactaatttggccgaaagtgacaaaatt 28100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 5485851 - 5485722
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||| ||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  5485851 tttcttccccaaatatataaaattggaaccctaattttaccatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 5485752  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  5485751 ttccccaaatcaaaaaattacaaaccctaa 5485722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 11641857 - 11641744
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| | || ||||||||| | ||| |||  || | ||||||| ||||||| |||| |||||||||||  ||||||||||| |    
T  11641857 ctctttcttccccaaatatatgatatcgaaaccctaatgttataatttgtcaactagagttcaaaatccccaaaatttcttccatggattgatgacaaag 11641758  T
Q  286 ttcttctccaattc 299  Q
    |||||| |||||||    
T  11641757 ttcttccccaattc 11641744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 39084951 - 39084822
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||| ||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  39084951 tttcttccccaaatatataaaattggaactctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39084852  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  39084851 ttccccaaatcaaaaaattacaaaccctaa 39084822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 32653430 - 32653344
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||| || |||| ||| |||||||||| ||| |||||||||  |||||||| | ||||||||||||||  ||||||||| |||||    
T  32653430 tttcttcccaaaatatataaaattgaaactctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataatt 32653344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 43778689 - 43778767
Alignment:
Q  197 ccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| |||||    
T  43778689 ccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataatt 43778767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 10544778 - 10544694
Alignment:
Q  191 tctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||| ||||||||||| |||||| ||||||| |||| ||||   |  |||| ||||||||||| |||| ||||||||||||||||    
T  10544778 tcttccccaaatctataaaattggaaccctaatttttcaatccctcgtctacagtccaaaatccccaaaatttcttccattaatt 10544694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 54387670 - 54387538
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||  || |||| ||| || ||| ||||||| | |||||||  || | ||||||| |||||||  ||| ||||||||||| |||||||| ||| |    
T  54387670 ctctttctgccctaaatatataaatttggaaccctaatgttacaatttgtcacctagagttcaaaatcctcaaaatttcttccatgaattgatgccaaag 54387571  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  54387570 ttcttccccaattcaaaaaacttaaaaccctaa 54387538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 230748 - 230868
Alignment:
Q  197 ccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaa 296  Q
    |||||| ||| ||||||  | |||| |||||||||  |||||||| | |||||| || |||| |||||||||| |||||  ||  |||||||||| | ||    
T  230748 ccaaatatataaaattggcatcctaattttacaatctgtaatctacactccaaagtccccaaaatttcttccaataattagtggtaacgttcttc-ctaa 230846  T
Q  297 ttctaaaaatttcaaaacctaa 318  Q
    ||| |||||||||||| |||||    
T  230847 ttcaaaaaatttcaaaccctaa 230868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 43520790 - 43520726
Alignment:
Q  241 agagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    ||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  43520790 agagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 43520726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 18058121 - 18058253
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| |||||| |||| || |||||||||  || ||||||||| |||||||  ||| | |||||| ||||||||||||||||     
T  18058121 ctctttcttccccaaatttataaaattggaaccttaattttacaatttgtcatctagagttcaaaatcctcaaaacttcttcaattaattgatgacaaca 18058220  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||||||||| ||||||||||||    
T  18058221 ttcttccccaattctaaaaacttcaaaacctaa 18058253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 42558085 - 42558192
Alignment:
Q  9 ggtgttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatta 108  Q
    |||||||||| ||||||  |||   |||||||||||||||| ||| |||||||||||||||||||| || | |||||||| | ||||||||||||||||     
T  42558085 ggtgttaacggtgctgatgtggaccgttaacctctcacaaggcttgtcatgtcaaatgccacacaagcataaactaatttggccgaaagtgacaaaattg 42558184  T
Q  109 ccaaggac 116  Q
    ||||||||    
T  42558185 ccaaggac 42558192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 5784666 - 5784537
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  5784666 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 5784567  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  5784566 ttccccaaatcaaaaaattgcaaaccctaa 5784537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 2870845 - 2870726
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||||||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| |||     
T  2870845 gctctttctttcccaaatatatcaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 2870746  T
Q  285 gttcttctccaattctaaaa 304  Q
    ||||||| ||||||| ||||    
T  2870745 gttcttccccaattcaaaaa 2870726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 31237139 - 31237272
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| |  ||| ||||||| | ||| |||  || | ||||||| ||||||| || | |||||||||||||||||||| |||     
T  31237139 gctctttcttccccaaatatataattttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttccattaattgatgtcaat 31237238  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||| || ||| |||||    
T  31237239 gttcttccccaattcaaaaaacttaaaaccctaa 31237272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 3369582 - 3369665
Alignment:
Q  33 tgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaattaccaaggac 116  Q
    |||| |||||||||||| ||| |||||||| ||| ||||||| || |||||||||| |  |||| |||||||||| ||||||||    
T  3369582 tgtttacctctcacaaggcttgtcatgtcagatgtcacacaagcagagactaatttggctgaaaatgacaaaatttccaaggac 3369665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 42558303 - 42558370
Alignment:
Q  251 atctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||||| | |||||||||||||| ||||| ||||||||  ||||||||||||| |||||| |||||    
T  42558303 atctccaaaaattcttccattaattaatgacgacgttctttcccaattctaaaaacttcaaaccctaa 42558370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 11152837 - 11152923
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||   ||||||| | ||||||||||||||  ||||||||| |||||    
T  11152837 tttcttccccaaatgtataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataatt 11152923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 35009608 - 35009542
Alignment:
Q  41 tctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaatt 107  Q
    ||||||||| |||  ||||| | ||||||||||| || |||||||||| ||||||||||||||||||    
T  35009608 tctcacaaggctttccatgttagatgccacacaagcagagactaatttggtcgaaagtgacaaaatt 35009542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 3369732 - 3369840
Alignment:
Q  191 tctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttctt 290  Q
    ||||||||||| | || |||||| ||||||| ||||| |||  ||   | |||||  ||||| ||||| |||||||| ||||||||||||||||||| ||    
T  3369732 tctttcccaaaccaataaaattggaaccctaattttataatttgtcgccaagagtttaaaatttccaaaatttcttctattaattgatgacaacgttttt 3369831  T
Q  291 ctccaattc 299  Q
    | |||||||    
T  3369832 ccccaattc 3369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 51894941 - 51895001
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattc 299  Q
    ||||||| |||||||||| | ||||||||||| |||||||| ||| ||||||| |||||||    
T  51894941 ctagagttcaaaatctcccaaatttcttccatgaattgatgtcaatgttcttccccaattc 51895001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 52642225 - 52642357
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| ||||||| | ||| ||| ||| |  |||||| ||||||| |||| ||||||||||| ||||||||  || |    
T  52642225 ctctttcttccccaaatatataaatttgtaaccctaatgttataattagtcacatagagttcaaaatccccaaaatttcttccatgaattgatgcaaaag 52642324  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||  |||||| ||||| || ||| |||||    
T  52642325 ttcttcctcaattcaaaaaacttaaaaccctaa 52642357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 37087851 - 37087773
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| |||| ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  37087851 ctagagttcaaaatccccaa-atttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 37087773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 50554498 - 50554633
Alignment:
Q  183 cagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgaca 282  Q
    |||||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||| | ||||||| || | ||||||| ||| |||||||| ||    
T  50554498 cagctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagacttcaaaatcccccaaatttcttacatgaattgatgtca 50554597  T
Q  283 acgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    | ||||||| ||||||| ||||| || ||| |||||    
T  50554598 atgttcttccccaattcaaaaaacttaaaaccctaa 50554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 45045286 - 45045364
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| || | ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  45045286 tagagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 45045364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 3012175 - 3012308
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||  |||  || | ||| ||| |||||||| | | ||||||||||| |||||||| |||     
T  3012175 gctctttcttccccaaatatataaatttggaaccctaatgttctaatttgtcacctatagttcaaaatctaccaaatttcttccatgaattgatgtcaat 3012274  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||| || ||| |||||    
T  3012275 gttcttccccaattcaaaaaacttaaaaccctaa 3012308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 8169248 - 8169183
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| |||||||||||| ||||||||||| ||||||||  ||  |||||| ||||||| |||||    
T  8169248 tagagttcaaaatctccaaaatttcttccatgaattgatgtaaaatttcttccccaattcaaaaaa 8169183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 25172775 - 25172702
Alignment:
Q  245 tccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||||||||||| |||||||||| |||||  ||  |||||||||| ||||||  ||||| |||||| |||||    
T  25172775 tccaaaatctccaaaatttcttccaataattagtggtaacgttcttccccaatttaaaaaaattcaaaccctaa 25172702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 33599593 - 33599658
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  33599593 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 33599658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 34776944 - 34777009
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  34776944 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 34777009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 4446 - 4572
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||||| ||||||||| |||||| ||| ||| |||||||||  || |||||||||  ||||||||||| ||| |||||||||||||||||||||    
T  4446 gctctttctttctcaaatctataaaattggaactctaattttacaatttgtcatctagagtttaaaatctccaaaatt-cttccattaattgatgacaac 4544  T
Q  285 gttcttctccaattctaaaaatttcaaa 312  Q
    |||||||  |||| ||||||| ||||||    
T  4545 gttcttcctcaatgctaaaaacttcaaa 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 4279 - 4379
Alignment:
Q  12 gttaacgatgctgacatggtgtgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaattacca 111  Q
    ||||||| |||| || || | ||||||||||||| |||| || ||| |||| ||| ||||||| || | ||||||||  ||||||||||||||||| |||    
T  4279 gttaacgttgcttacgtgttctgttaacctctcaaaagatttgtcaagtcagatgtcacacaagcatatactaatttgatcgaaagtgacaaaatttcca 4378  T
Q  112 a 112  Q
    |    
T  4379 a 4379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 27077256 - 27077124
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| |||||||| || | |||| ||||||| ||||| |||  || |   ||||| ||||||||| || ||||||||||||||||||||||||||    
T  27077256 ctctttcttccccaaatccataacattggaaccctaattttataatttgtcactgagagttcaaaatctctaaaatttcttccattaattgatgacaacg 27077157  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| ||||||||||||    
T  27077156 ttcttccccaattcaaaaaacttcaaaacctaa 27077124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 1344612 - 1344479
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| || |||| ||| |||||| ||||||| |||||||||   ||||||| | |||||||||||||| |||||||||| |||||| ||  |||    
T  1344612 gctctttcttccctaaatatataaaattggaaccctaattttacaatctttaatctacactccaaaatctccaaaatttcttccaataattggtggtaac 1344513  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||| |||||| |||||    
T  1344512 gttcttccccaattcaaaaaacttcaaaccctaa 1344479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 24497874 - 24497759
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| || |||| ||| |||||||||| ||| ||||||||||||||||||| | ||||||||  |||| |||||||||| ||||  |||| |||||||    
T  24497874 tttcttccctaaatatataaaattgaaactctaattttacaataagtaatctacactccaaaattcccaaaatttcttccaataatcaatgataacgttc 24497775  T
Q  289 ttctccaattctaaaa 304  Q
    ||| ||||||| ||||    
T  24497774 ttccccaattcaaaaa 24497759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 6116700 - 6116610
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaatt 275  Q
    |||||||||| ||||||||||| |||||||||||||| |||| ||||   ||||||| |||| |||||| |||| ||||||||||||||||    
T  6116700 gctctttcttccccaaatctataaaattgaaaccctaatttttcaatctctaatctacagtcaaaaatccccaaaatttcttccattaatt 6116610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 41494208 - 41494274
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    ||||||| ||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||| |||||    
T  41494208 ctagagttcaaaatccccaaaatttcttccatgaattgatgacaaagttcttccccaattcaaaaaa 41494274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 42619581 - 42619710
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||   ||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  42619581 tttcttccccaaatgtataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 42619680  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  42619681 ttccccaaatcaaaaaattgcaaaccctaa 42619710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 28821860 - 28821748
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||||||||||| | ||| |||  || | ||||||| ||||||| || | |||||||||||||||||||| |||     
T  28821860 gctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccattaattgatgtcaat 28821761  T
Q  285 gttcttctccaat 297  Q
     |||||| |||||    
T  28821760 cttcttccccaat 28821748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 27077404 - 27077321
Alignment:
Q  33 tgttaacctctcacaagacttatcatgtcaaatgccacacaaacaaagactaattttgtcgaaagtgacaaaattaccaaggac 116  Q
    ||||||||||||||||| |||  ||||||| ||||||||||||||  ||||||||| |   ||| |||||||||| ||||||||    
T  27077404 tgttaacctctcacaaggcttgccatgtcagatgccacacaaacatggactaatttggcttaaaatgacaaaatttccaaggac 27077321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 17575608 - 17575540
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaattt 308  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| ||||||||    
T  17575608 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaattt 17575540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 8541072 - 8540954
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    |||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||| ||| |||||||||| | ||||||||||| || ||||| ||| ||    
T  8541072 tctttcttccccaaatatataaatttggaaccctaatattataattcgtcacctaaagttcaaaatctcccaaatttcttccatgaaatgatgtcaatgt 8540973  T
Q  287 tcttctccaattctaaaaa 305  Q
    ||||| ||||||| |||||    
T  8540972 tcttccccaattcaaaaaa 8540954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 24540171 - 24540236
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  24540171 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 24540236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 34328600 - 34328467
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctcc-aagatttcttccattaattgatgacaac 284  Q
    ||||||||| ||||||| ||| || ||| ||||||| | ||| |||  ||   ||||||| ||||||| || || ||||||||||| |||||||| |||     
T  34328600 ctctttcttccccaaatatataaatttggaaccctaatattataatttgtcgcctagagttcaaaatcccccaaaatttcttccatgaattgatgtcaat 34328501  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| ||||| || ||| |||||    
T  34328500 gttcttccccaattcaaaaaacttaaaaccctaa 34328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 35861823 - 35861938
Alignment:
Q  177 atacatcagctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctcc-aagatttcttccattaatt 275  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| || || |||  |||||||| ||||||||||| || || || |||||| ||||||    
T  35861823 atacaacagctctttcttccccaaatctataaaattgaaaccctaattataaaatttgtaatctatagtccaaaatccccaaaaatatcttcctttaatt 35861922  T
Q  276 gatgacaacgttcttc 291  Q
    ||||||||| ||||||    
T  35861923 gatgacaacattcttc 35861938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 32842721 - 32842852
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    |||||||| | ||||||||| |||||| ||||||| |||| ||||   ||||||| | ||||||||  |||| |||||||||||||||| ||||||||||    
T  32842721 tctttcttcctcaaatctataaaattggaaccctaatttttcaatctctaatctacaatccaaaattcccaaaatttcttccattaattaatgacaacgt 32842820  T
Q  287 tcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||   | ||||||||| |||||| |||||    
T  32842821 tcttccttacttctaaaaacttcaaaccctaa 32842852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 24846289 - 24846210
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| |||||||  |||||||||||| || |||||||||||| ||||||| ||||||| |||||||| ||| |||||    
T  24846289 ctagagttcaaaatcctcaagatttcttctatgaattgatgacaaagttcttccccaattcaaaaaatttaaaatcctaa 24846210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 23876036 - 23876094
Alignment:
Q  260 atttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||||||||||||||||||||  |||||| ||||||| ||||| ||||||||||||    
T  23876036 atttcttccattaattgatgacaatcttcttccccaattcaaaaaacttcaaaacctaa 23876094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 30598658 - 30598790
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||  ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||||| | ||||||||||| |||||||| ||| |    
T  30598658 ctctttctaccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaatg 30598757  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  30598758 ttcttccccaattcaaaaaacttaaaaccctaa 30598790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 51686093 - 51686014
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| ||||||| |||| ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  51686093 ctagagttcaaaatccccaaaatttcttccatgaattgatgccaaagttcttccccaattcaaaaaacttaaaaccctaa 51686014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 37865676 - 37865754
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttc 267  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  |||||||    
T  37865676 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttc 37865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 46113804 - 46113738
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    ||||||| ||||||| |||| ||||||||||| |||||||| ||| ||||||| ||||||| |||||    
T  46113804 ctagagttcaaaatccccaaaatttcttccatgaattgatgccaaagttcttccccaattcaaaaaa 46113738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 41945898 - 41945769
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||| ||  |||||||| | ||||||||||| ||  ||||||||| ||||| | |   ||||||    
T  41945898 tttcttccccaaatatataaaattggaaccctaattttacgatgtgtaatctacactccaaaatctctaaattttcttccaataattaagggtcacgttc 41945799  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  41945798 ttccccaaatcaaaaaattgcaaatcctaa 41945769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 13466851 - 13466804
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    ||||||| ||||||| | || |||||||||||||||||||||||||||    
T  13466851 ctagagttcaaaatccctaaaatttcttccattaattgatgacaacgt 13466804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 42282207 - 42282136
Alignment:
Q  247 caaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| |||| ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  42282207 caaaatccccaaaatttcttccatgaattgatgccaaagttcttccccaattcaaaaaacttaaaaccctaa 42282136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 2661588 - 2661523
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  2661588 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 2661523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 7883703 - 7883768
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  7883703 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 7883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 17516741 - 17516609
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatc-tccaagatttcttccattaattgatgacaac 284  Q
    ||||||||| ||||||| ||| || ||| ||| ||| | ||| |||  |||| ||||||| ||||||| ||||| ||||||||||| |||||||| |||     
T  17516741 ctctttcttccccaaatatataaatttggaactctaatgttataatttgtaacctagagttcaaaatcctccaa-atttcttccatgaattgatgtcaat 17516643  T
Q  285 gttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||||| | ||||| ||||| || ||| |||||    
T  17516642 gttcttccctaattcaaaaaacttaaaaccctaa 17516609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 35904199 - 35904264
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  35904199 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 35904264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 43766762 - 43766685
Alignment:
Q  241 agagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaatttcaaaacctaa 318  Q
    ||||| ||||||| || | ||||||||||| |||||||| ||| ||||||| ||||||| ||||| || ||| |||||    
T  43766762 agagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttcttccccaattcaaaaaacttaaaaccctaa 43766685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 53188151 - 53188216
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  53188151 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 53188216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 21350390 - 21350258
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | |||||||  |||||| || | ||||||||||| |||||||| ||| |    
T  21350390 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagtttaaaatcccccaaatttcttccatgaattgatgtcaatg 21350291  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    | |||| ||||||| ||||| || ||| |||||    
T  21350290 tacttccccaattcaaaaaacttaaaaccctaa 21350258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 14337973 - 14338104
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    ||||||||||| |||| ||| || ||| ||||||| ||||| |||  || |  |||||| ||||||| |||| |||||||||||||||||||||||| ||    
T  14337973 tctttctttccgaaatatataaatttggaaccctaattttataatttgtcacatagagttcaaaatccccaaaatttcttccattaattgatgacaaagt 14338072  T
Q  287 tcttctccaattctaaaaatttcaaaacctaa 318  Q
    || || ||| ||||||||| || |||||||||    
T  14338073 tcatccccatttctaaaaacttaaaaacctaa 14338104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 17936339 - 17936208
Alignment:
Q  187 tctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgt 286  Q
    |||||||| | ||||||||| |||||||||||||| |||| ||||   ||||||| | ||||||||  |||| |||||||||||||||| ||||||||||    
T  17936339 tctttcttcctcaaatctataaaattgaaaccctaatttttcaatctctaatctacaatccaaaattcccaaaatttcttccattaattaatgacaacgt 17936240  T
Q  287 tcttctccaattctaaaaatttcaaaacctaa 318  Q
    | ||  | | ||||||||| |||||| |||||    
T  17936239 tattgcctacttctaaaaacttcaaaccctaa 17936208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 11356922 - 11356799
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||||| | ||||||||||| |||||||| |||     
T  11356922 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaat 11356823  T
Q  285 gttcttctccaattctaaaaattt 308  Q
    ||||||| ||||||| ||||||||    
T  11356822 gttcttccccaattcaaaaaattt 11356799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 17950853 - 17950982
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  17950853 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 17950952  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  17950953 ttccccaaatcaaaaaattacaaaccctaa 17950982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 35174674 - 35174803
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| ||||||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  35174674 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 35174773  T
Q  289 ttctccaattctaaaaatttcaaaacctaa 318  Q
    ||| |||| || ||||||| |||| |||||    
T  35174774 ttccccaaatcaaaaaattgcaaaccctaa 35174803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 4289710 - 4289838
Alignment:
Q  189 tttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacgttc 288  Q
    |||||| ||||||| ||| |||||| || |||| |||||||||  |||||||| | ||||||||||||||  ||||||||| ||||| | |   ||||||    
T  4289710 tttcttccccaaatatataaaattggaatcctaattttacaatgtgtaatctatactccaaaatctccaaattttcttccaataattaagggtcacgttc 4289809  T
Q  289 ttctccaattctaaaaatttcaaaaccta 317  Q
    ||| |||| || ||||||| |||| ||||    
T  4289810 ttccccaaatcaaaaaattgcaaacccta 4289838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 7371453 - 7371585
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| ||| |    
T  7371453 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 7371552  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  7371553 ttcttccccaattcaaaaaacttaaaaccctaa 7371585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 20525102 - 20524971
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||||||||||  | ||| |||  || | |||||||  |||||| || | ||||||||||| |||||||| ||| |    
T  20525102 ctctttcttccccaaatatat-aatttgaaaccctgatgttataatttgtcacctagagttaaaaatcccccaaatttcttccatgaattgatgtcaatg 20525004  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    |||||| ||||||| ||||| || ||| |||||    
T  20525003 ttcttccccaattcaaaaaacttaaaaccctaa 20524971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 1283 - 1160
Alignment:
Q  185 gctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 284  Q
    |||||||||| ||||||| ||| || ||| ||||||| | ||| |||  || | ||||||| |||||||||| | ||||||||||| |||||||| |||     
T  1283 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaat 1184  T
Q  285 gttcttctccaattctaaaaattt 308  Q
    ||||||| ||||||| ||||||||    
T  1183 gttcttccccaattcaaaaaattt 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 9666 - 9534
Alignment:
Q  186 ctctttctttcccaaatctattaaattgaaaccctagttttacaataagtaatctagagtccaaaatctccaagatttcttccattaattgatgacaacg 285  Q
    ||||||||| ||||||| ||| || ||||||||||| | ||| |||  || | ||||||| ||||||| || | ||||||||||| |||||||| ||| |    
T  9666 ctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 9567  T
Q  286 ttcttctccaattctaaaaatttcaaaacctaa 318  Q
    || ||| ||||||| ||||| || ||| |||||    
T  9566 tttttccccaattcaaaaaacttaaaaccctaa 9534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 1114 - 1174
Alignment:
Q  239 ctagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattc 299  Q
    ||||||| |||||||  ||| ||||||||||| |||||||||||| ||||||| |||||||    
T  1114 ctagagttcaaaatccacaaaatttcttccatgaattgatgacaaagttcttccccaattc 1174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 6917 - 6852
Alignment:
Q  240 tagagtccaaaatctccaagatttcttccattaattgatgacaacgttcttctccaattctaaaaa 305  Q
    |||||| ||||||| |||| ||||||||||| |||||||| |||  |||||| ||||||| |||||    
T  6917 tagagttcaaaatccccaaaatttcttccatgaattgatgtcaaatttcttccccaattcaaaaaa 6852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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