View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_85 (Length: 365)
Name: NF9839A_low_85
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_85 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0225 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 69 - 365
Target Start/End: Original strand, 18917913 - 18918209
Alignment:
| Q |
69 |
tggtaataatttcaatacctccggtcaccgtcatagcaaatgtaggaagggagttggccatattcgacattgtgctgtgaaattgaagcgtattgcaagg |
168 |
Q |
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| T |
18917913 |
tggtaaaaatttcactacctccggtcaccatcgtagtaaacgtaggaagggtgctggtcagattcgccattgtgctgtcaagttgaagcgtattgcaagg |
18918012 |
T |
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| Q |
169 |
ctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattcttcccttgataaggtaatttcta |
268 |
Q |
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| T |
18918013 |
ctttcggaagaagatcgaaagaaagttttacgtgctttgcgtaagacgtctaggcgacgtaaggtggtttcggatttttccaatgataaggtaatttcta |
18918112 |
T |
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| Q |
269 |
atgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatggagataaacagacattgtctgatga |
365 |
Q |
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| T |
18918113 |
atgatagctcttctgttaatggctctcaaatttctgttaataatgactagacaaactggttgacacttcatggagataaaaagactttgtctgatga |
18918209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 342
Target Start/End: Original strand, 33095963 - 33096154
Alignment:
| Q |
151 |
ttgaagcgtattgcaaggctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattcttccc |
250 |
Q |
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| T |
33095963 |
ttgaagcgtatagcaaggttatcagaagaagatcgaaagcaagttttacgtgctttgcgtaaaactcataggcgacgtaaggtggttccgggtacatcca |
33096062 |
T |
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| Q |
251 |
ttgataaggtaatttctaatgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatgga |
342 |
Q |
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| T |
33096063 |
atgataaggtaaattccaatgataacttttctgttaatggttcacatgcgtctgttaataatgactggatgaattggttggctcttcatgga |
33096154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 151 - 342
Target Start/End: Original strand, 22530064 - 22530255
Alignment:
| Q |
151 |
ttgaagcgtattgcaaggctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattcttccc |
250 |
Q |
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| T |
22530064 |
ttgaagcgtattgcgaggctttccgagggagaccgtaaggaagttttacgtgcattgcgtaagacaagaaggcgacaaaaggtggtgtcggagactcatg |
22530163 |
T |
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| Q |
251 |
ttgataaggtaatttctaatgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatgga |
342 |
Q |
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| T |
22530164 |
tagataaggtaattttgaatgatagctcctctgttattggttctcaatcttctctcaataacgactggtcaaattggttggttcttcatgga |
22530255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 29549597 - 29549406
Alignment:
| Q |
151 |
ttgaagcgtattgcaaggctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattcttccc |
250 |
Q |
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| T |
29549597 |
ttgaagcgtattgcgaggctatccgagggagaccgtaaggaagttttacgtgcattgcgtaagacgagaaggcgacaaaaggtggtgtcggagactcatt |
29549498 |
T |
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| Q |
251 |
ttgataaggtaatttctaatgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatgga |
342 |
Q |
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| T |
29549497 |
tagataaggtaattttgaatgatagctcatatgttattggttctcaatcatctattaataatgactggtcgaattggttggttcttcatgga |
29549406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 2582 - 2775
Alignment:
| Q |
148 |
aaattgaagcgtattgcaaggctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattctt |
247 |
Q |
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||||||||||||||||| ||| | | || || ||||| ||| ||||||||||||| |||||||| || |||||| ||||||||||| |||| ||| |
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| T |
2582 |
aaattgaagcgtattgccaggttgttggaggaggatcgtaagcaagttttacgtgcattgcgtaaatctcgtaggcgtcgtaaggtggtgtcgggcactt |
2681 |
T |
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| Q |
248 |
cccttgataaggtaatttctaatgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatgg |
341 |
Q |
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| T |
2682 |
ccaaagttaaggtaaattccattgatatttcttctgttaatggatctcagtcgtctgttaataatgactggatgaattggttggctcttcatgg |
2775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 24733797 - 24733990
Alignment:
| Q |
148 |
aaattgaagcgtattgcaaggctttccgaagaagatcgaaaggaagttttacgtgctttgcgtaagacttctaggcgacgtaaggtggtttcggattctt |
247 |
Q |
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|||||||||||||||||| | ||||| || ||||| || |||||||||||||||||||||||||| |||||| ||||||||| ||||| || || |
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| T |
24733797 |
aaattgaagcgtattgcacaattatccgaggaggatcgtaaagaagttttacgtgctttgcgtaagacgaataggcgtcgtaaggtgcattcggtttgtt |
24733896 |
T |
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| Q |
248 |
cccttgataaggtaatttctaatgatagctcttctgttaatggatctcaaatttttgttaataatgattggacaaattggttggcgcttcatgg |
341 |
Q |
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| T |
24733897 |
ctaaggataaggagatttcgaatgatagttcttcagttaacggttcgcagtcatctgttaataatgattggatgaattggttggttcttcatgg |
24733990 |
T |
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