View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_86 (Length: 365)
Name: NF9839A_low_86
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_86 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 133 - 365
Target Start/End: Complemental strand, 21440967 - 21440734
Alignment:
| Q |
133 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
232 |
Q |
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| T |
21440967 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagagacacatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
21440868 |
T |
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| Q |
233 |
gacagtattgctggacacattcaggaactacataggatctttaccggttga-nnnnnnngtttgtttgtgtgatcgagtatgttaatggaatcaacatga |
331 |
Q |
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| T |
21440867 |
gacagtattgctggacacattcaggaactacataggatctttaccggttgattttttttgtttgtttttgtgattgagtatgttaatggaatcaacatga |
21440768 |
T |
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| Q |
332 |
gagttcatgcaatttgttgtgttgtgaattgtga |
365 |
Q |
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| T |
21440767 |
gagttcatgcaatttgttgtgttgtgaattgtga |
21440734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 21441482 - 21441352
Alignment:
| Q |
11 |
gtgttcgtgtatgtgtcaatgtttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattcttcatataatttgtatttg |
110 |
Q |
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| T |
21441482 |
gtgttcgtgaatgtgtcaatgtttcatagtgtatgtgtctcttacgctgaacgagaatgaatttcttaaatttgtgcattattcctataatttgtatctg |
21441383 |
T |
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| Q |
111 |
aaaatttgaattttttatgttttatttagaa |
141 |
Q |
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| T |
21441382 |
aaaattcgaattttttatgttttatttagaa |
21441352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 33 - 364
Target Start/End: Complemental strand, 21440383 - 21440065
Alignment:
| Q |
33 |
ttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattcttcat---ataatttgtatttgaaaatttgaat------tt |
123 |
Q |
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| T |
21440383 |
ttcatagtgtatgtgtatcttaagctgtaatagaatgaatttcttaaagttgtgcattcttctttttataacttgtaatggagaattaaattctttagtt |
21440284 |
T |
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| Q |
124 |
tttatgttttatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaa |
223 |
Q |
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| T |
21440283 |
tttttttttaatttagaataaacaatcattttggcatgtaaatgtgtgacaaatgagagacacatttgagaattat-----taattttgattaatttgaa |
21440189 |
T |
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| Q |
224 |
aactaaagcgacagtattgctggacacattcaggaactacataggatctttaccggttgannnnnnngtttgtttgtgtgatcgagtatgttaatggaat |
323 |
Q |
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| T |
21440188 |
tactatagtgacagtagtgccggacacattcaggaactacataggatctttcccg-----------------tttttgtgaatgagtatgttaatggaat |
21440106 |
T |
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| Q |
324 |
caacatgagagttcatgcaatttgttgtgttgtgaattgtg |
364 |
Q |
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| T |
21440105 |
cagcattagagttcatgcaatttgttgcgttgtcaattgtg |
21440065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 12743045 - 12743113
Alignment:
| Q |
295 |
gtttgtgtgatcgagtatgttaatggaatcaacatgagagttcatgcaatttgttgtgttgtgaattgtga |
365 |
Q |
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| T |
12743045 |
gtttttgtgattaagtatgttaatggaattaacat--gagttcatggaatcggttgtgttgtgaattgtga |
12743113 |
T |
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