View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_88 (Length: 364)
Name: NF9839A_low_88
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_88 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 42 - 364
Target Start/End: Original strand, 3036513 - 3036836
Alignment:
| Q |
42 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
141 |
Q |
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| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
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| Q |
142 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
241 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
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| Q |
242 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
340 |
Q |
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| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
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| Q |
341 |
caaatgccaaagatgaggtatggt |
364 |
Q |
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| T |
3036813 |
caaatgccaaagatgaggtatggt |
3036836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 52 - 364
Target Start/End: Original strand, 16863270 - 16863583
Alignment:
| Q |
52 |
ttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttg |
151 |
Q |
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| T |
16863270 |
ttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatg |
16863369 |
T |
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| Q |
152 |
gtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataa-gtgtcacgagctgggacactatc |
250 |
Q |
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| T |
16863370 |
gtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatc |
16863469 |
T |
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| Q |
251 |
agaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaa |
350 |
Q |
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| T |
16863470 |
aaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaa |
16863569 |
T |
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| Q |
351 |
agatgaggtatggt |
364 |
Q |
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| T |
16863570 |
agatgaggtatggt |
16863583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 46 - 364
Target Start/End: Original strand, 20528888 - 20529204
Alignment:
| Q |
46 |
agtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgg |
145 |
Q |
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||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
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| Q |
146 |
gatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggaca |
245 |
Q |
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||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||| |
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| T |
20528988 |
gatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggaca |
20529085 |
T |
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| Q |
246 |
ctatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaat |
345 |
Q |
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||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||||||| |||| ||||||||||| |
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| T |
20529086 |
ctatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaat |
20529185 |
T |
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| Q |
346 |
gccaaagatgaggtatggt |
364 |
Q |
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| T |
20529186 |
gtcaaagatgaggtatggt |
20529204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 364
Target Start/End: Complemental strand, 40613109 - 40612800
Alignment:
| Q |
43 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
142 |
Q |
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|||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
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| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
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| Q |
143 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
242 |
Q |
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|||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || | ||||||||| |||||||| | || |||| |
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| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
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| Q |
243 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
342 |
Q |
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|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
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| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
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| Q |
343 |
aatgccaaagatgaggtatggt |
364 |
Q |
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| T |
40612821 |
aacgccaaagatgaggtatggt |
40612800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 177 - 364
Target Start/End: Original strand, 20542323 - 20542510
Alignment:
| Q |
177 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
276 |
Q |
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|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
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| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
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| Q |
277 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggt |
364 |
Q |
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| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggt |
20542510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
43 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
119 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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