View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_9 (Length: 498)
Name: NF9839A_low_9
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 4048211 - 4048565
Alignment:
| Q |
13 |
catcatctttcatcacactactaataatc----tgtcacgagcacagacaatagagtgcagctgctgctgctccacctgccggccgtcatttcacacttc |
108 |
Q |
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| T |
4048211 |
catcatctttcatcacactactaataatcaatctgtcacgagcacagacaatagagtgcagctgctgctgctccacctgccggccgtcatttcacacttc |
4048310 |
T |
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| Q |
109 |
tgctctgccatcactcactgatttgacccttcttccatgtggtccctctcattctcagttttcacgcaattttatattatttaattgggggcggtacctt |
208 |
Q |
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| T |
4048311 |
tgctctgccatcactcactgatttgacccttcttccctgtggtccctctcattctcagttttcacgcaattttatattatttaattgggggcggtacctt |
4048410 |
T |
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| Q |
209 |
ggttatagtccaattttgtgggacccacttagggtagatgataacgtggcgtgtttctgatgagtagccccatcaccaaagaatctgtcggcagcagaga |
308 |
Q |
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| T |
4048411 |
ggttatagtccaattttgtgggacccacttagggtagattataacgtggcgtgattctgatgagtagccccatcaccaaagaatctgtcggcagcagaga |
4048510 |
T |
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| Q |
309 |
cgtcacgctgttctttcttacattattacccacacgcaaacatcaacaacacttt |
363 |
Q |
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| T |
4048511 |
cgtcacgctgttctttcttacattattacccacacgctaacatcaacaacacttt |
4048565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 425 - 495
Target Start/End: Original strand, 4048627 - 4048697
Alignment:
| Q |
425 |
gaatagtgttggtctttctttcttcagttgttctccgtctacctctcgtcgttgtcgatgttgttgtttgt |
495 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4048627 |
gaatagtgttggtctttctttcattagttgttctccgtctacctctcgtcgttgtcgatgttgttgtttgt |
4048697 |
T |
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