View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_99 (Length: 355)
Name: NF9839A_low_99
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_99 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 9804976 - 9805330
Alignment:
| Q |
1 |
ttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttatact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9804976 |
ttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttcttatact |
9805075 |
T |
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| Q |
101 |
cttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcattt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805076 |
cttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcattc |
9805175 |
T |
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| Q |
201 |
atgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcacaat |
300 |
Q |
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| T |
9805176 |
ctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcacaat |
9805275 |
T |
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| Q |
301 |
ataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgt |
355 |
Q |
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| T |
9805276 |
ataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgt |
9805330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 9817901 - 9818211
Alignment:
| Q |
1 |
ttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat--a |
98 |
Q |
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| T |
9817901 |
ttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaatttattatctacacatggatttcttttcta |
9818000 |
T |
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| Q |
99 |
ctcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcat |
198 |
Q |
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| T |
9818001 |
ctcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgcttttcattttgttcaacaagaattccttttccctttgatgcat |
9818100 |
T |
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| Q |
199 |
ttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa--aaatca |
296 |
Q |
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| T |
9818101 |
tcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaatacaagtacataatttaataaccgtataaaaaaaataaatca |
9818200 |
T |
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| Q |
297 |
caatatacctt |
307 |
Q |
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||||||||||| |
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| T |
9818201 |
caatatacctt |
9818211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 348
Target Start/End: Complemental strand, 9806792 - 9806473
Alignment:
| Q |
26 |
tttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttactt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| | ||||||| ||||||||||||||||| ||||||| |
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| T |
9806792 |
tttcaaacatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccaccttactt |
9806693 |
T |
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| Q |
123 |
ttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaattta |
217 |
Q |
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| T |
9806692 |
tcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt------------gtgtacaaaaattaa |
9806606 |
T |
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| Q |
218 |
agataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaatataccttgattctcc |
315 |
Q |
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| T |
9806605 |
atataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaatataccttgattctcc |
9806506 |
T |
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| Q |
316 |
cttttcgcgagtacatgaaataccttccatctt |
348 |
Q |
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||||||| ||| || |||||||||||||||||| |
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| T |
9806505 |
cttttcgtgagcacgtgaaataccttccatctt |
9806473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 11910 - 12264
Alignment:
| Q |
1 |
ttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttctta---t |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| || ||||||||| | |
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| T |
11910 |
ttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttattatgtacacatagatttcttattct |
12009 |
T |
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| Q |
98 |
actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttg |
192 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
12010 |
actcttcaaattccccatcttac-tttagggaagagtcttcctcgttatcactagtggcatccttttcattttgttcaacaagaattccttctcccttcg |
12108 |
T |
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| Q |
193 |
atgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa-a |
291 |
Q |
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|||||| |||||| ||||||||| |||||||| |||||||||||||||| |||||||||| | ||||||||| || ||||||| | ||||| || | |
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| T |
12109 |
ctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataacaaacataagtacataattgaataaccaactaaaaaaata |
12207 |
T |
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| Q |
292 |
aatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatctt |
348 |
Q |
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| T |
12208 |
aatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatctt |
12264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
250 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
341 |
Q |
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||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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