View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9840_high_1 (Length: 239)
Name: NF9840_high_1
Description: NF9840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9840_high_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 66253 - 66046
Alignment:
| Q |
19 |
atatgtgaagcttatacagagtgtaaatgtatgtgaacgtgtgttatgaatttatctgaaacatgatagtgttcgagagcaagacagtgtcattcatcac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
66253 |
atatgtgaagcttatacagagtgtaaatgtatgtgaacgtgtgttatgaatttatctgaaacatgatagtgttagagagcaagacagtgtcattcatcac |
66154 |
T |
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| Q |
119 |
tatccagtactaccaacgcccgacctatttctttactgttttcattcattttccaatgcttatcttctaagccatgatttctccataactctctggcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66153 |
tatccagtactaccaacgcccgacctatttctttactgttttcattcattttccaatgcttatcttctaagccatgatttctccataactctctggcttt |
66054 |
T |
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| Q |
219 |
tctctgct |
226 |
Q |
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|||||||| |
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| T |
66053 |
tctctgct |
66046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 40900031 - 40900238
Alignment:
| Q |
19 |
atatgtgaagcttatacagagtgtaaatgtatgtgaacgtgtgttatgaatttatctgaaacatgatagtgttcgagagcaagacagtgtcattcatcac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40900031 |
atatgtgaagcttatacagagtgtaaatgtatgtgaacgtgtgttatgaatttatctgaaacatgatagtgttagagagcaagacagtgtcattcatcac |
40900130 |
T |
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| Q |
119 |
tatccagtactaccaacgcccgacctatttctttactgttttcattcattttccaatgcttatcttctaagccatgatttctccataactctctggcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40900131 |
tatccagtactaccaacgcccgacctatttctttactgttttcattcattttccaatgcttatcttctaagccatgatttctccataactctctggcttt |
40900230 |
T |
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| Q |
219 |
tctctgct |
226 |
Q |
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|||||||| |
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| T |
40900231 |
tctctgct |
40900238 |
T |
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Back To:
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