View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9840_low_2 (Length: 306)
Name: NF9840_low_2
Description: NF9840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9840_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 21441958 - 21442079
Alignment:
| Q |
171 |
agcgacatgtgtcgttgagagaaatacaaagttgttgcgctgcatgtttaggtagcccagctgcctaaagagcattaagtttgccttacaattctggaag |
270 |
Q |
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| T |
21441958 |
agcgacatgtgtcgttgagagaaatacaaagttgttgcgctgcatgtttaggtagcccagctgcctaaagagcattaagtttgccttacaattctggaag |
21442057 |
T |
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| Q |
271 |
cagacaaccatatccataaagg |
292 |
Q |
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| T |
21442058 |
cagacaaccatatccacaaagg |
21442079 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 21441826 - 21441896
Alignment:
| Q |
14 |
agatgaaatgacaaatttataataaacttatacaggtaagtggaggttctccctctacatctcatttgcct |
84 |
Q |
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| T |
21441826 |
agatgaaatgacaaatctattataaacttacacaggcaagtggagattctccttctacatctcatttgcct |
21441896 |
T |
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