View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9840_low_3 (Length: 268)
Name: NF9840_low_3
Description: NF9840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9840_low_3 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 1895919 - 1895657
Alignment:
| Q |
6 |
agagagatgaaatgcaaaacataaagaaattaatcaagggtggcttttgttaaaatcacggtgaatttgacaaaatcttggtagcaccttgttgccaaaa |
105 |
Q |
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| T |
1895919 |
agagatatgaaatgcaaaacataaagaaattaatcaagggtggattttgttaaaatcacggtgaatttgagaaaatcttggtagcaccttgttgccaaaa |
1895820 |
T |
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| Q |
106 |
ttcttgtagcgtgattctgttaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtg |
205 |
Q |
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| T |
1895819 |
ttcttatagcgtgattctgtcaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtg |
1895720 |
T |
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| Q |
206 |
aaccttctacttctagtgaaaagtgtgacaggaagaagaacagaagtaccaacagcataagaa |
268 |
Q |
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| T |
1895719 |
aaccttctacttctagtgaaaagtgtgacaggaagaagaacagaagtaccaacagcataagaa |
1895657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 1905706 - 1905506
Alignment:
| Q |
62 |
cacggtgaatttgacaaaatcttggtagcaccttgttgccaaaattcttgta----gcgtgattctgttaaactcaccgtcaattcaaacatttactaag |
157 |
Q |
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| T |
1905706 |
cacggtgaatttgacaaaatcgtggaagcaccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaag |
1905607 |
T |
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| Q |
158 |
ttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtgaaaagtgtgacaggaagaagaacagaagtaccaa |
257 |
Q |
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| T |
1905606 |
ttatatacatatgttgtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaacagaagtaccaa |
1905507 |
T |
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| Q |
258 |
c |
258 |
Q |
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| T |
1905506 |
c |
1905506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 1911166 - 1911115
Alignment:
| Q |
215 |
cttctagtgaaaagtgtgacaggaagaagaacagaagtaccaacagcataag |
266 |
Q |
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| T |
1911166 |
cttctagtgaaaagagtgacagggagaagaacagaagtaccaacagcataag |
1911115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 17240731 - 17240698
Alignment:
| Q |
116 |
gtgattctgttaaactcaccgtcaattcaaacat |
149 |
Q |
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| T |
17240731 |
gtgattctgtcaaactcaccgtcaattcaaacat |
17240698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 1878189 - 1878153
Alignment:
| Q |
230 |
gtgacaggaagaagaacagaagtaccaacagcataag |
266 |
Q |
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| T |
1878189 |
gtgataggaaggagaacagaagtaccaacagcataag |
1878153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 7873144 - 7873192
Alignment:
| Q |
115 |
cgtgattctgttaaactcaccgtcaattcaaacatttactaagttatat |
163 |
Q |
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| T |
7873144 |
cgtgattatgttaaactcaccgtcaatccaaacatgtactaagttatat |
7873192 |
T |
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