View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9841_high_4 (Length: 420)
Name: NF9841_high_4
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9841_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 53088595 - 53088988
Alignment:
| Q |
11 |
cagagagaaattagagaatataaaatggaaatgattttaactcataagtgattttgattttccatgtttattttattcgaccaaaacatttgtattgtta |
110 |
Q |
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| T |
53088595 |
cagagagaaattagagaatataaaatggaaatgatttcaactcataagtgattttgattttccatgtttattttattcgatcaaaacatttgtattgtta |
53088694 |
T |
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| Q |
111 |
aggggtacatctacgatctccttctcccccaattggattcttctagcagcagtttctagtttatgtttaaaaaatatttattagcctggtccatgcattg |
210 |
Q |
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| T |
53088695 |
aggggtacatctacgatctccttctcccc-agttggattctgctagcagcagtttctagtttatgtttaaaaaatatttattagcctggtccatgtattg |
53088793 |
T |
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| Q |
211 |
atccgccggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccggtctagttttttaaacaatgcatggaacatccacaat |
310 |
Q |
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| T |
53088794 |
atccgccggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccggtctagttttttaaacaatgcatggaacatccacaat |
53088893 |
T |
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| Q |
311 |
atgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacattttacacaatattattagaggcagttagatacatat |
405 |
Q |
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| T |
53088894 |
atgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacattttacacaatattattagaggcagttagatacatat |
53088988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 191 - 404
Target Start/End: Original strand, 14333484 - 14333689
Alignment:
| Q |
191 |
ttagcctggtccatgcattgatccgcc-ggttcaccaaacctgagttttgactcaaccaattcgaccagcccggtcccggtccggtctagttttttaaac |
289 |
Q |
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| T |
14333484 |
ttagcctggtccttgctttgatccgcccggttcaccaaacctgaggttcggctcaaccaattcgacca---------cagtccggtttagttctttaaac |
14333574 |
T |
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| Q |
290 |
aatgcatggaacatccacaatatgcaagtatccatactctgctactctactagtcgtcaactcacaaagttcaactacattttacacaatattattagag |
389 |
Q |
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| T |
14333575 |
aatgcatggaacatccacaatatgcaagtatctatacactgctactctactagtcgtcacttcacaaagttcaactaaattttacacaatattattagcg |
14333674 |
T |
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| Q |
390 |
gcagttagatacata |
404 |
Q |
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| T |
14333675 |
acagttagatacata |
14333689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 14333333 - 14333483
Alignment:
| Q |
11 |
cagagagaaattagagaatataa-aatggaaatgattttaactcataagtgattttgattttccatgtttattttattcgaccaaaacatttgtattgtt |
109 |
Q |
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|||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
14333333 |
cagagagaaattagagaaaaagagaatggatatgattttaactcacaagtgattttgattttc-atgtttattttattcgaccaaaacatttatattgtt |
14333431 |
T |
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| Q |
110 |
aaggggtacatctacgatctccttctcccccaattggattcttctagcagcagttt |
165 |
Q |
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|||||||||||||| |||| | |||||| || |||||||||||||||||||| |
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| T |
14333432 |
aaggggtacatctatgatcgcgttctcc----gttcgattcttctagcagcagttt |
14333483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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