View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9841_high_8 (Length: 225)
Name: NF9841_high_8
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9841_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 2800514 - 2800430
Alignment:
| Q |
22 |
gcaaatgtaggaaagaaatgtccagatgatgtctgaaaggagtccaaatataggtcttgattacaaggttttgaatgaaagcttc |
106 |
Q |
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| T |
2800514 |
gcaaatgttggaaagaaatgtccaaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaagcttc |
2800430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 2800371 - 2800330
Alignment:
| Q |
167 |
gtcactcggtgaattagtccagattctccttgatagttgcag |
208 |
Q |
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| T |
2800371 |
gtcactcggtgaattagtccagattctccttgatagttgcag |
2800330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 2835079 - 2835134
Alignment:
| Q |
51 |
tgtctgaaaggagtccaaatataggtcttgattacaaggttttgaatgaaagcttc |
106 |
Q |
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| T |
2835079 |
tgtctgaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttc |
2835134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 11114757 - 11114823
Alignment:
| Q |
31 |
ggaaagaaatgtccagatgatgtctgaaaggagtccaaatataggtcttgattacaaggttttgaat |
97 |
Q |
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| T |
11114757 |
ggaaagaaatgtcaaaatgacatgtgaatggaatccagaaataggtcttgattacaaggttttgaat |
11114823 |
T |
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