View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9841_low_1 (Length: 597)
Name: NF9841_low_1
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9841_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 50595085 - 50594518
Alignment:
| Q |
8 |
ggagaagcataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccact-gttttcaccaaccacttcc |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50595085 |
ggagaaacataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccacttgttttcaccaaccacttcc |
50594986 |
T |
|
| Q |
107 |
aattaacacataaaaattatcactaatactcataaccacaagactcttaccacataactaatactattattttaacattaaccatgactacaagcnnnnn |
206 |
Q |
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| T |
50594985 |
aattaacacataaaaattatcactaatactcataaccacaagactcttaccacacaactaatactattattttaacattaaccatgactacaggcaaaaa |
50594886 |
T |
|
| Q |
207 |
nntttcatatactatattaagtaattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaataca |
306 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
50594885 |
aaattcatatgctat--taagtaattaagtaatacattgttcataacatggataaatccacttatttat--ttagatttttaattaagtgatacaataca |
50594790 |
T |
|
| Q |
307 |
aacatgatttttaactctcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttcctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594789 |
aacatgatttttaactctcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttcctt |
50594690 |
T |
|
| Q |
407 |
catcttgctccagatagagacactcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggcttcat |
506 |
Q |
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| T |
50594689 |
catcttgctccacatagagacactcttttgcttctctccacaatgccttataaaatggtgtatcgtcaaattggtaatactcacccaatataggcttcat |
50594590 |
T |
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| Q |
507 |
tgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagtatcagt |
578 |
Q |
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| T |
50594589 |
tgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagtatcagt |
50594518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 229 - 504
Target Start/End: Complemental strand, 1897455 - 1897191
Alignment:
| Q |
229 |
aattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaatacaa-acatgatttttaactctcac |
327 |
Q |
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| T |
1897455 |
aatttagtaatacattgttcataacatggacaaatccacttattta------gctttttgaccaagtgatacaatacaagacaagattttcaagtctcac |
1897362 |
T |
|
| Q |
328 |
tttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccagatagagac |
427 |
Q |
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| T |
1897361 |
atcatgattc---atgcatacttt---attcatcaaaacttgttcatggaccaataattaaccttttgagatgttctttcatctggctcaacatagagac |
1897268 |
T |
|
| Q |
428 |
actcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggcttc |
504 |
Q |
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| T |
1897267 |
actcttttgcttttctccacaatgccttggaaaattatgtatcatcaaattggtaatactcacccagtatagacttc |
1897191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 579
Target Start/End: Complemental strand, 23031847 - 23031738
Alignment:
| Q |
470 |
catcaaattggtaatactcacccaatataggcttcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatg |
569 |
Q |
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||||||| || ||||| |||||||| ||||| |||| ||||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||| ||||||| |
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| T |
23031847 |
catcaaaatgataatattcacccaaaataggtttcacacctttggtagcttccattgcatgataatgaggcatagttgaaaacatatgatgaaccacatg |
23031748 |
T |
|
| Q |
570 |
agtatcagtt |
579 |
Q |
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|||||||||| |
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| T |
23031747 |
agtatcagtt |
23031738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 572
Target Start/End: Complemental strand, 37020750 - 37020581
Alignment:
| Q |
403 |
ccttcatcttgctccagatagagacactcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggct |
502 |
Q |
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|||| |||| |||| | ||||| ||||||| | ||||||||||| ||||||| ||||||||||| ||||| || | ||||| || ||||| || || | |
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| T |
37020750 |
ccttgatctggctcgacatagatacactctctagcttctctccataatgcctggtaaaatggtgtttcatccaaccgataataatctcccaaaattggtt |
37020651 |
T |
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| Q |
503 |
tcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagt |
572 |
Q |
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| T |
37020650 |
taattgccttggtagcctccattgcatgataatgaggcattgtggagaacaagtgatgtgccacatgagt |
37020581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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