View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9841_low_2 (Length: 504)
Name: NF9841_low_2
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9841_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 35624027 - 35623555
Alignment:
| Q |
11 |
caaaggtactatgtttcgtgtaaggaggtttacattggctatcactaacttcaacgccttttcaatatcgaaatgtctttgttaatacgtgacaaaattg |
110 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35624027 |
caaaggtactatgttttatgtaagggggtttacattggctatcactaacttcaacgccttttcaatatcgaaatgtctttgttaatacgtgacaaaattg |
35623928 |
T |
|
| Q |
111 |
gtcatctcaaatatcacacataacatagtcaatatgagtacacttgtaaatatcttttttcgaagttagatgaaatcaaagattgtgaattagtttggtt |
210 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
35623927 |
gtcatctcaaatatcacacata-----gtcaatataagtacccttgtaaatatctttttttgaagttggatgaaatcaaagattgtgaattagtttggtt |
35623833 |
T |
|
| Q |
211 |
tggttgttaggattttaatattgttttgatatgtatccttagcatatgtcttaactaatcttaaaaagtccccatttatggatggagaatgtcctcaacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35623832 |
tggttgttaggattttaatattgttttgatatgtatccttggcatatgtcttaactaatcttaaaaagtccccatttatggatggagaatgtcatcaacc |
35623733 |
T |
|
| Q |
311 |
tatgaaccttctcattgtattgttgctattttaacatctcaataaatgaagtttatatactgttggaagnnnnnnnnnctcactatttgtttataaaatt |
410 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35623732 |
tatgaaccttctgattgtatcgttgctattttaacatctcaatgaatgaagtttatatactgttggaagaaaaaaaaactcactatttgtttataaaatt |
35623633 |
T |
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| Q |
411 |
agtattctactactattttgtttttaaaatatagtattctactggtacctgtttacgaagacaatatagtctgaaaac |
488 |
Q |
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| T |
35623632 |
agtattctactactattttgtttttaaaatatagtattctactggtacctgtttacgaagacaatatagtctgaaaac |
35623555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 16207786 - 16207833
Alignment:
| Q |
150 |
acacttgtaaatatcttttttcgaagttagatgaaatcaaagattgtg |
197 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
16207786 |
acacttgcaaatatcttttttcgaagttagatgaaattaaagattgtg |
16207833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 31269344 - 31269518
Alignment:
| Q |
11 |
caaaggtactatgtttcgtgtaaggaggtttacattggctatcactaacttcaacgccttttcaatatcgaaatgtctttgttaatacgtgacaaaattg |
110 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||||||| |||| ||||| | | ||| || ||| ||||| ||| |||||| ||| || ||||| |
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| T |
31269344 |
caaaggtactatgtttcgagtaagg--gtttatgatggctatctctaaattcaatgtcctttaaacatc-aaatgcctt-gttaatgtgtggcagaattg |
31269439 |
T |
|
| Q |
111 |
gtcatctcaaatatcacacataacatagtcaatatgagt--acacttgtaaatatcttttttcgaagttagatgaaatcaaaga |
192 |
Q |
| |
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||||||| | |||||||| ||| |||||||||||| |||| | |||||||||||||||||||| |||||||||||||| |
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| T |
31269440 |
gtcatcttagatatcacagata-----gtcaatatgagtgaacaccttcaaatatcttttttcgaagttcgatgaaatcaaaga |
31269518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 31269629 - 31269730
Alignment:
| Q |
239 |
atatgtatccttagcatatgtcttaactaatcttaaaaagtccccatttatggatggagaatgtcctcaacctatgaaccttctcattgtattgttgcta |
338 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||| || ||| ||||||||||| ||||||||| |||| ||| | |||| | |||||||||||||| |
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| T |
31269629 |
atatgtatccttagcatatg-cctagct-atcttaataactcctgatttatggatgaagaatgtcc-caacatataatccttgtggttgtattgttgcta |
31269725 |
T |
|
| Q |
339 |
tttta |
343 |
Q |
| |
|
||||| |
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|
| T |
31269726 |
tttta |
31269730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 12691198 - 12691163
Alignment:
| Q |
162 |
atcttttttcgaagttagatgaaatcaaagattgtg |
197 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
12691198 |
atcttttttcgaagttggatgaaatcaaagattgtg |
12691163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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