View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9841_low_6 (Length: 291)

Name: NF9841_low_6
Description: NF9841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9841_low_6
NF9841_low_6
[»] chr5 (4 HSPs)
chr5 (35-256)||(16470134-16470350)
chr5 (198-250)||(22010948-22011000)
chr5 (198-246)||(25369036-25369084)
chr5 (198-250)||(25769602-25769654)
[»] chr2 (8 HSPs)
chr2 (156-250)||(25576542-25576636)
chr2 (156-256)||(13821796-13821895)
chr2 (156-256)||(27597933-27598032)
chr2 (156-246)||(27190200-27190290)
chr2 (156-246)||(27840014-27840104)
chr2 (246-280)||(27598039-27598073)
chr2 (198-250)||(28141493-28141545)
chr2 (198-250)||(28144337-28144389)
[»] chr3 (3 HSPs)
chr3 (37-142)||(2178659-2178764)
chr3 (157-250)||(16224251-16224344)
chr3 (204-250)||(16226897-16226943)
[»] scaffold0170 (1 HSPs)
scaffold0170 (156-232)||(1156-1231)
[»] chr8 (9 HSPs)
chr8 (186-250)||(21301526-21301590)
chr8 (156-250)||(12149458-12149552)
chr8 (158-250)||(17983215-17983308)
chr8 (156-239)||(23818027-23818108)
chr8 (194-256)||(9006781-9006843)
chr8 (187-250)||(23242166-23242229)
chr8 (246-280)||(23817970-23818004)
chr8 (156-250)||(24093383-24093477)
chr8 (198-246)||(22815000-22815048)
[»] chr1 (6 HSPs)
chr1 (156-251)||(22533879-22533974)
chr1 (156-250)||(18523120-18523214)
chr1 (198-240)||(25401608-25401650)
chr1 (188-246)||(20886427-20886485)
chr1 (205-256)||(10159024-10159076)
chr1 (246-278)||(25401552-25401584)
[»] scaffold0009 (2 HSPs)
scaffold0009 (156-246)||(222507-222596)
scaffold0009 (156-246)||(50241-50331)
[»] chr7 (9 HSPs)
chr7 (156-250)||(9560613-9560706)
chr7 (156-256)||(14942871-14942971)
chr7 (156-256)||(15370464-15370564)
chr7 (211-256)||(18098497-18098542)
chr7 (156-250)||(10310180-10310275)
chr7 (188-250)||(12330819-12330881)
chr7 (198-246)||(14961029-14961077)
chr7 (198-246)||(15390501-15390549)
chr7 (160-240)||(17132401-17132480)
[»] chr4 (3 HSPs)
chr4 (156-246)||(12810140-12810230)
chr4 (156-250)||(11889642-11889737)
chr4 (156-250)||(14632907-14633001)
[»] scaffold0031 (1 HSPs)
scaffold0031 (156-240)||(38209-38291)
[»] scaffold0005 (1 HSPs)
scaffold0005 (156-250)||(184291-184385)
[»] chr6 (2 HSPs)
chr6 (158-246)||(21375940-21376027)
chr6 (156-246)||(7391275-7391365)
[»] scaffold0056 (1 HSPs)
scaffold0056 (198-250)||(20691-20743)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 16470134 - 16470350
Alignment:
Q  35 gcgatcaattttttcaacaacctgcttagggtgtagccaacgacaagccgtaacattgtgcccaatcatctgacaatgtgaacattaatcttgtagccat 134  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |    
T  16470134 gcgatcaactttttcaacaacctgctcagggtgtagccaacgacaagccgtaacattgtgctcaatcatctgacaacgtgaacattaatcttgtagccgt 16470233  T
Q  135 tcataaacttctaacttgaaagcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttct 234  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||     | |||||||||||||||||||||||||    
T  16470234 tcataaacttctaatttgaaagcaatctcaaacctgtcgagagatggtgtattttttgtttctaaacc-----taccctctaagtaacctgagtgcttct 16470328  T
Q  235 cgtggccgttttcaaaaccttt 256  Q
    ||||||||||||||||||||||    
T  16470329 cgtggccgttttcaaaaccttt 16470350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 22011000 - 22010948
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||||||||||||||||||| | | |||||| ||||||||    
T  22011000 aaacccgtcctgccctctaagtaacctgagtgcattttgtggcctttttcaaa 22010948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 25369084 - 25369036
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||| ||||||| ||||| ||||| | |||||||||||||    
T  25369084 aaacccgtcctgctctctaagcaacctaagtgcatttcgtggccgtttt 25369036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 25769654 - 25769602
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||| ||| |||||||||||||| |||| | |||||||| ||||||||    
T  25769654 aaacccgtcttgctctctaagtaacctgcgtgcatttcgtggcctttttcaaa 25769602  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 25576636 - 25576542
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| | |||  ||||  ||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  25576636 gcaatctcaaacctgtcgaaagacagtgccctttttatttcaaaacccgtcctgctctctaagtaacctgagtgcatctcgtggcctttttcaaa 25576542  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 13821895 - 13821796
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaaacctt 255  Q
    |||||||||||| |||| |||||   ||| |||||||||||||| ||||||| || ||||||||||||||||||| ||||||| || |||||||||||||    
T  13821895 gcaatctcaaac-tgtcgagagacaatgccttttttgtttctaaccccgtcccgctctctaagtaacctgagtgcatctcgtgacctttttcaaaacctt 13821797  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 27597933 - 27598032
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggc-cgttttcaaaacct 254  Q
    |||||||||||||| || ||||| ||||| ||||  ||||  ||||||||||||| ||||||||||||||||||| ||||||||| | |||| |||||||    
T  27597933 gcaatctcaaacctatcgagagacggtgcctttt--gtttagaaacccgtcctgctctctaagtaacctgagtgcatctcgtggctcttttttaaaacct 27598030  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 27190200 - 27190290
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||| ||||| |||||  ||||  ||||| |||| |||| |||||||| ||||| ||||||||||||| |||||||||| ||||    
T  27190200 gcaatctcaaatctgtcgagagacagtgccctttttatttcaaaactcgtcctgctctctatgtaacctgagtgcatctcgtggccctttt 27190290  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 27840014 - 27840104
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||| ||||| |||||  ||||  ||||| |||| |||| |||||||| ||||| ||||||||||||| |||||||||| ||||    
T  27840014 gcaatctcaaatctgtcgagagacagtgccctttttatttcaaaactcgtcctgctctctatgtaacctgagtgcatctcgtggccctttt 27840104  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 27598039 - 27598073
Alignment:
Q  246 tcaaaacctttgcacaacatgatcctgagatctct 280  Q
    ||||||||||||||||||||| |||||||||||||    
T  27598039 tcaaaacctttgcacaacatgctcctgagatctct 27598073  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 28141493 - 28141545
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||| ||| ||||||||||||||||||| | | |||||| ||||||||    
T  28141493 aaacccgtcttgctctctaagtaacctgagtgcattttgtggcctttttcaaa 28141545  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28144389 - 28144337
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||| ||| ||| ||||||||||||||||||| | |||||||| ||||||||    
T  28144389 aaacctgtcttgctctctaagtaacctgagtgcatttcgtggcctttttcaaa 28144337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 2178764 - 2178659
Alignment:
Q  37 gatcaattttttcaacaacctgcttagggtgtagccaacgacaagccgtaacattgtgcccaatcatctgacaatgtgaacattaatcttgtagccattc 136  Q
    ||||||| ||||| ||||||||  | ||||| ||||||||  |||||||||||| ||| |||||||| |||||||||||||| |||||  | ||||||||    
T  2178764 gatcaatcttttccacaacctgtgttgggtgcagccaacgctaagccgtaacatcgtgaccaatcatttgacaatgtgaacaataatcagggagccattc 2178665  T
Q  137 ataaac 142  Q
    ||||||    
T  2178664 ataaac 2178659  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 16224251 - 16224344
Alignment:
Q  157 caatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||| || |||||  ||||  ||||| |||| |||| |||||||  ||||||||||| ||||||| |||||||||| ||||||||    
T  16224251 caatctcaaacctatcgagagacagtgccctttttatttcaaaactcgtcctggtctctaagtaacatgagtgcctctcgtggcctttttcaaa 16224344  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 16226897 - 16226943
Alignment:
Q  204 gtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  16226897 gtcctgctctctaagtaacctgagtgcatttcgtggcctttttcaaa 16226943  T

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Target: scaffold0170 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 1231 - 1156
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgctt 232  Q
    |||||||||||||||||||||||  |||    ||||||||||||||||||||||| |||||||||||||||||||||    
T  1231 gcaatctcaaacctgtcaagagacagtg-tccttttgtttctaaacccgtcctgctctctaagtaacctgagtgctt 1156  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 21301526 - 21301590
Alignment:
Q  186 ttttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  21301526 ttttttatttcaaaacccgtcctgctctctaagtaacctgagtgcatctcgtggcctttttcaaa 21301590  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 12149458 - 12149552
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| |||||   |||  ||||| |||  ||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||    
T  12149458 gcaatctcaaacctgtcgagagacaatgccctttttatttaaaaacccgtcttgctctctaagtaacctgagtgcatctcgtggcctttttcaaa 12149552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 17983308 - 17983215
Alignment:
Q  158 aatctcaaacctgtcaagagatggtgca-ttttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||| ||||| |||||  |||||| |||| |||| | |||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  17983308 aatctcaaacctgtcgagagacggtgcccttttttatttcaaaactcatcctgctctctaagtaacttgagtgcatctcgtggcctttttcaaa 17983215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 23818108 - 23818027
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtgg 239  Q
    ||||||||||||||||| |||||  |||| ||||  ||||  |||| |||||||| ||||||||||||||||||| ||||||||    
T  23818108 gcaatctcaaacctgtcgagagacagtgcctttt--gtttacaaactcgtcctgctctctaagtaacctgagtgcatctcgtgg 23818027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 9006843 - 9006781
Alignment:
Q  194 ttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaaaccttt 256  Q
    |||||||| |||||||| ||||||| ||||||||||| |||||||||| |||  |||||||||    
T  9006843 ttctaaactcgtcctgctctctaagcaacctgagtgcatctcgtggccttttctaaaaccttt 9006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 23242229 - 23242166
Alignment:
Q  187 tttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||| |||| |||| |||||||| || |||||||||||||||| ||||| |||| ||||||||    
T  23242229 tttttatttcaaaactcgtcctgctctttaagtaacctgagtgcatctcgaggcctttttcaaa 23242166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 23818004 - 23817970
Alignment:
Q  246 tcaaaacctttgcacaacatgatcctgagatctct 280  Q
    ||||||||||||||||||||| |||||||||||||    
T  23818004 tcaaaacctttgcacaacatgctcctgagatctct 23817970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 24093383 - 24093477
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| |||||| ||||  |||||  |   |||| |||||||  ||||||||||||||||||| | ||||| || ||||||||    
T  24093383 gcaatctcaaacctgtcgagagatagtgccctttttactctaaaactcgtcctgatctctaagtaacctgagtgcatttcgtgacctttttcaaa 24093477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 22815048 - 22815000
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||| ||||||| ||||||||||| | |||||||| ||||    
T  22815048 aaacccgtcctgctctctaagcaacctgagtgcatttcgtggccttttt 22815000  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 22533879 - 22533974
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaaa 251  Q
    ||||||||||||||||| |||||  ||||  ||||| |||| |||  |||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  22533879 gcaatctcaaacctgtcgagagacagtgccatttttatttcaaaattcgtcctgctctctaagtaacctgagtgcatctcgtgacctttttcaaaa 22533974  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 18523120 - 18523214
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||||| |||  ||||  | |||  ||| ||||||||||||| |||||||||| || ||||| |||||| ||| ||||||||    
T  18523120 gcaatctcaaacctgtcaaaagacagtgccctctttaattcaaaacccgtcctgctctctaagtaaactaagtgcatctcgtcgcctttttcaaa 18523214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 25401650 - 25401608
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggc 240  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  25401650 aaacccgtcctgctctctaagtaacctgagtgcatctcgtggc 25401608  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 20886485 - 20886427
Alignment:
Q  188 ttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    |||| |||||| ||||||| ||||||||||| ||||||| ||| |||||||||| ||||    
T  20886485 ttttatttctatacccgtcttgccctctaagcaacctgaatgcatctcgtggccctttt 20886427  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 10159024 - 10159076
Alignment:
Q  205 tcctgccctctaagtaacctgagtgcttctcgtggc-cgttttcaaaaccttt 256  Q
    |||||| ||||||||||||||||||| ||||||||| | |||||||| |||||    
T  10159024 tcctgctctctaagtaacctgagtgcatctcgtggctctttttcaaacccttt 10159076  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 25401584 - 25401552
Alignment:
Q  246 tcaaaacctttgcacaacatgatcctgagatct 278  Q
    ||||||||||||||||||||| |||||||||||    
T  25401584 tcaaaacctttgcacaacatgctcctgagatct 25401552  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 222596 - 222507
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    |||||||||||||||||||||||  |||   ||||| |||| |||| |||||| | ||||||||||||||||||| |||||||||| ||||    
T  222596 gcaatctcaaacctgtcaagagacagtg-tctttttatttcaaaactcgtccttctctctaagtaacctgagtgcatctcgtggccttttt 222507  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 50331 - 50241
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttcta-aacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||||||| |||||   ||| ||||| ||| ||| ||||||||||||  |||||||||||||||||| | |||||||| ||||    
T  50331 gcaatctcaaacctgtcgagagacaatgcctttttcgtt-ctacaacccgtcctgctttctaagtaacctgagtgcatttcgtggccttttt 50241  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 9560613 - 9560706
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    |||||||||||||| || |||||  |||| |||| ||||||||||   ||||||||||||||||||||||||||| |||  ||||| ||||||||    
T  9560613 gcaatctcaaacctatcgagagacagtgcctttt-tgtttctaaagttgtcctgccctctaagtaacctgagtgcatctgctggcctttttcaaa 9560706  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 14942971 - 14942871
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaaacctt 255  Q
    ||||||||||||||||| ||| || ||||  ||||| |||| ||||| ||||||| || |||||| ||||||||||| || ||||| ||||  |||||||    
T  14942971 gcaatctcaaacctgtcgagacatagtgccctttttatttcaaaacctgtcctgctctttaagtagcctgagtgcttatcatggcccttttttaaacctt 14942872  T
Q  256 t 256  Q
    |    
T  14942871 t 14942871  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 15370564 - 15370464
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaaacctt 255  Q
    ||||||||||||||||| ||| || ||||  ||||| |||| ||||| ||||||| || |||||| ||||||||||| || ||||| ||||  |||||||    
T  15370564 gcaatctcaaacctgtcgagacatagtgccctttttatttcaaaacctgtcctgctctttaagtagcctgagtgcttatcatggcccttttttaaacctt 15370465  T
Q  256 t 256  Q
    |    
T  15370464 t 15370464  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 18098497 - 18098542
Alignment:
Q  211 cctctaagtaacctgagtgcttctcgtggccgttttcaaaaccttt 256  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||    
T  18098497 cctctaagtaacctgagtgcatcttgtggccattttcaaaaccttt 18098542  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 10310180 - 10310275
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaaccc-gtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||| ||||||||||| |||||  |||| ||||||   |||||| || || |||| ||||||||||||||||||| | |||||||| ||||||||    
T  10310180 gcaatttcaaacctgtcgagagaccgtgcctttttttactctaaaacctgttctgctctctaagtaacctgagtgcatttcgtggcctttttcaaa 10310275  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 12330881 - 12330819
Alignment:
Q  188 ttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||  || || | ||||||||||||||||||| |||| ||||| ||||||||    
T  12330881 ttttgtttctaaacatgttcttctctctaagtaacctgagtgcatctcatggcccttttcaaa 12330819  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14961077 - 14961029
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||| ||||||| ||||||||||| ||| |||||| ||||    
T  14961077 aaacccgtcctgctctctaagcaacctgagtgcatcttgtggccctttt 14961029  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 15390549 - 15390501
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||| ||||||| ||||||||||| ||| |||||| ||||    
T  15390549 aaacccgtcctgctctctaagcaacctgagtgcatcttgtggccctttt 15390501  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 17132480 - 17132401
Alignment:
Q  160 tctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggc 240  Q
    ||||||||||||| |||||| || | |||||| | || ||||||||| ||| ||||||| ||||||||||| | |||||||    
T  17132480 tctcaaacctgtcgagagatagttccttttttatatc-aaacccgtcatgctctctaagcaacctgagtgcatttcgtggc 17132401  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 12810140 - 12810230
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||||||| |||||  ||||  ||| | |||| ||||| ||||||| ||||||||||||||||||| |||||| ||| ||||    
T  12810140 gcaatctcaaacctgtcgagagacagtgccctttctatttcaaaacctgtcctgctctctaagtaacctgagtgcatctcgttgccctttt 12810230  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 11889642 - 11889737
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttct-aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| |||||  |||| ||||||   ||| ||| ||| ||||| ||||||||||||||||||| | |||||||| ||||||||    
T  11889642 gcaatctcaaacctgtcgagagacagtgcctttttttactctgaaatccgccctgctctctaagtaacctgagtgcatttcgtggcctttttcaaa 11889737  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 14632907 - 14633001
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| |||||  ||||  ||||| ||   ||||||||| ||| ||||||||||||||||| | ||| |||||| ||||||||    
T  14632907 gcaatctcaaacctgtcgagagacagtgccctttttattctaaaacccgtcttgctctctaagtaacctgagtacatcttgtggcctttttcaaa 14633001  T

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Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 38291 - 38209
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggc 240  Q
    ||||||||||||||||| |||||  |||| |||| |  ||  ||||||||||||| ||||||||||||||||||| |||||||||    
T  38291 gcaatctcaaacctgtcgagagacagtgccttttct--ttagaaacccgtcctgctctctaagtaacctgagtgcatctcgtggc 38209  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 184385 - 184291
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||||||||| |||||  ||||  ||||| ||   ||||||||| ||| ||||||||||||||||| | ||| |||||| ||||||||    
T  184385 gcaatctcaaacctgtcgagagacagtgccctttttattctaaaacccgtcttgctctctaagtaacctgagtacatcttgtggcctttttcaaa 184291  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 21376027 - 21375940
Alignment:
Q  158 aatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||||| |||||  ||||  ||||  |||| |||||| |||||| ||||||||||||||||||| |||| ||||| ||||    
T  21376027 aatctcaaacctgtcgagagacagtgccctttta-tttcaaaacccatcctgctctctaagtaacctgagtgcatctcatggccctttt 21375940  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 7391275 - 7391365
Alignment:
Q  156 gcaatctcaaacctgtcaagagatggtgcattttttgtttctaaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgtttt 246  Q
    ||||||||||||||||| |||||   |||  ||||| |||  |||| |||||||| ||||||||||||| ||||| || ||||||| ||||    
T  7391275 gcaatctcaaacctgtcgagagacaatgccctttttatttgaaaactcgtcctgctctctaagtaacctaagtgcatcccgtggccctttt 7391365  T

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Target: scaffold0056 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 20691 - 20743
Alignment:
Q  198 aaacccgtcctgccctctaagtaacctgagtgcttctcgtggccgttttcaaa 250  Q
    ||||||||||| | ||||||||||||||||||| | ||||| || ||||||||    
T  20691 aaacccgtccttctctctaagtaacctgagtgcatttcgtgtcctttttcaaa 20743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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